Plant FIBer expression Database

Potri.006G119250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G143200
[exp]
0 / 1 AT1G66350 198 / 8e-58 RGA-like 1 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G119250.1 pacid=42769825 polypeptide=Potri.006G119250.1.p locus=Potri.006G119250 ID=Potri.006G119250.1.v4.1 annot-version=v4.1
ATGCGAGCAAATTCCTTATCTTGTGTGGTTTCTTGTCTTTCAACAGAGGAAATTCAGTTCAACAAGTTCATTATTTTGCTAAAGTTCTTCAAGAGAGGGG
GATTGAACAAGAAATTGAGGTTGTCATATTCGGGAATGGGAAGCAAAGGTCAGCTATTGCATCCCCAAGAGACAACAGTCACTCTAATCCTACTCTTATC
ACGACAACCCTATAATCAAGAAGCAAAGGAGGAAAAGAGGTTCCTCTTGTTGCATAACCAAGGTTCAGCAAAGAATGGAAGGTTGGGGAAATTAATTAAT
TCTCATTGA
AA sequence
>Potri.006G119250.1 pacid=42769825 polypeptide=Potri.006G119250.1.p locus=Potri.006G119250 ID=Potri.006G119250.1.v4.1 annot-version=v4.1
MRANSLSCVVSCLSTEEIQFNKFIILLKFFKRGGLNKKLRLSYSGMGSKGQLLHPQETTVTLILLLSRQPYNQEAKEEKRFLLLHNQGSAKNGRLGKLIN
SH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G119250
[exp]
0 1
AT2G33690 Late embryogenesis abundant pr... Potri.005G145200
[exp]
1.00 0.9942
AT3G23250 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) Potri.011G040200
[exp]
2.00 0.9677
AT5G38760 Late embryogenesis abundant pr... Potri.004G107600
[exp]
3.46 0.9244
AT1G04410 c-NAD-MDH1 cytosolic-NAD-dependent malate... Potri.002G141900
[exp]
28.84 0.9163
Potri.010G007402
[exp]
34.27 0.8990
AT1G75700 HVA22G HVA22-like protein G (.1) Potri.004G166800
[exp]
34.81 0.8520
AT5G40780 LHT1, LTH1 lysine histidine transporter 1... Potri.010G055800
[exp]
35.79 0.8804
AT3G19620 Glycosyl hydrolase family prot... Potri.007G114300
[exp]
38.43 0.8416
AT1G32583 unknown protein Potri.010G246300
[exp]
42.28 0.7395
AT2G39800 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate... Potri.008G060200
[exp]
47.52 0.7971

Potri.006G119250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.