Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27920 515 / 0 SCPL51 serine carboxypeptidase-like 51 (.1.2.3) AT3G45010 114 / 2e-27 SCPL48 serine carboxypeptidase-like 48 (.1) AT1G15000 107 / 3e-25 SCPL50 serine carboxypeptidase-like 50 (.1) AT5G22980 105 / 3e-24 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G52000 72 / 2e-13 SCPL36 serine carboxypeptidase-like 36 (.1) AT3G10410 72 / 2e-13 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G07990 67 / 7e-12 SCPL27 serine carboxypeptidase-like 27 (.1) AT5G42240 66 / 3e-11 SCPL42 serine carboxypeptidase-like 42 (.1) AT2G05850 65 / 4e-11 SCPL38 serine carboxypeptidase-like 38 (.1) AT2G35770 65 / 6e-11 SCPL28 serine carboxypeptidase-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G003100 [exp] 543 / 0 AT2G27920 589 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.008G129800 [exp] 115 / 1e-27 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.004G215400 [exp] 106 / 2e-24 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.008G129850 [exp] 81 / 2e-16 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.005G060100 [exp] 77 / 4e-15 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.005G091800 [exp] 74 / 7e-14 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.012G105500 [exp] 72 / 2e-13 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.010G220200 [exp] 70 / 1e-12 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G034800 [exp] 69 / 2e-12 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035555 [exp] 538 / 0 AT2G27920 492 / 1e-172 serine carboxypeptidase-like 51 (.1.2.3) Lus10027734 [exp] 538 / 0 AT2G27920 489 / 2e-171 serine carboxypeptidase-like 51 (.1.2.3) Lus10041352 [exp] 517 / 0 AT2G27920 567 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10036578 [exp] 508 / 3e-178 AT2G27920 565 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10042334 [exp] 116 / 4e-28 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10041339 [exp] 115 / 2e-27 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10026331 [exp] 112 / 8e-27 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 104 / 7e-24 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1) Lus10037958 [exp] 100 / 2e-22 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037380 [exp] 74 / 2e-15 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.006G119300.1 pacid=42769991 polypeptide=Potri.006G119300.1.p locus=Potri.006G119300 ID=Potri.006G119300.1.v4.1 annot-version=v4.1 ATGGGGAAACACTACCTTGTTTTCCTTTGCCTTCTAGGAATATTTTGCTTTCCTTTGCTTCACTGTTATCTGGCCTTGGCTGCAGGAACTGATGATGGGT CTGAGCAATGGGGATATGTTGAAGTTCGACCCAAGGCTCATCTATTTTGGTGGCATTACAAAAGTCCTTATAGGGTTGAAGATCCAACGAAACCATGGCC AATAATTTTATGGCTCCAAGGAGGACCAGGGGGCTCTGGTGTTGCATTTGGAAATTTTCTAGAAATAGGACCGCTGGACGGCAATTTGAACCCCCGCAAT TCGACTTGGCTCCTGAAAGCAGATCTTTTATTTGTGGATAGCCCGGTGGCAACAGGATTTAGTTACGTGGAGGACGAGGCACTGGTGGTTAGGAGTGATG AAGACGCAGCAGCTGATTTAACTGCTTTGTTGAAAGAGCTCTTTAATGGAAACGAAACTCTCCAAAAAAGTCCTTTATACATTTTTGCTGAGTCATATGG AGGCAAATTTGCTGCCACACTCGGGGTTTCAGCTCTCAAAGCCATTGAAGCAGGGGAATTGAAGCTTCAACTAGGGGGAGTTGCTTTGGGAGATAGCTGG ATTTCTCCTGAAGATTTCGTGTTTACATGGGGTCCTCTTCTCAAAGATCTATCAAGAATGAACAGCAATGGCTTAAACAGCTCAAACAGTTTAGCTGTAA AGATTCAGCAGCAGCTAGCTGAAGGAAAATATGAAGATGCGACATCAACATGGAGAGAACTAGAGGATGTTGTCTTTTCCAACAGTAACAATGTGGATTT CTACAACTTCCTTTTGGATTATGTAAATGATCCTGTCATCGGGAGCACAACCCAAGAATCAAAAGGATTTGTGGCTGCTGACAGATATTCGAGATATCTG AGCACTAAAATGTATCCATCACCAGGGAGCACTGGAGTGAGGAGCACCGAAAACCTTTATGACCTAATGAACGGGCCAATAAGACAGAAACTAAAGATTA TTCCTGAGAATGTGACATGGGATGGACAAGGTGGGTTGGTTTTCCAGGCCTTGGTTGGTGATTTCATGAAGCCCAGAATCCAAGAGGTTGATGAGCTCTT AGCCAAAGGAATAAACGTGACTATATACAATGGACAGGTTGATCTCATATGCTCAACCAAAGGAGCAGAAGCGTGGGTTAACAAACTCAAGTGGGATGGT TTGCAGAATTTCTTAAGTCTGGATCGTTCTCCTTTATATTGCAAAAGTGATAACACCACCACAAAGGGATTTACAAGTTCGTACAAGAACTTGTTTTTCT ATTGGATCCTTGGAGCTGGCCACTTCGTTCCAGTCGAACAGCCTTGTGTTTCTCTGCAGATGGTGGGGAACGTTACTAAATCACCAAATAACTTTTAG
AA sequence Show only first row Show all	>Potri.006G119300.1 pacid=42769991 polypeptide=Potri.006G119300.1.p locus=Potri.006G119300 ID=Potri.006G119300.1.v4.1 annot-version=v4.1 MGKHYLVFLCLLGIFCFPLLHCYLALAAGTDDGSEQWGYVEVRPKAHLFWWHYKSPYRVEDPTKPWPIILWLQGGPGGSGVAFGNFLEIGPLDGNLNPRN STWLLKADLLFVDSPVATGFSYVEDEALVVRSDEDAAADLTALLKELFNGNETLQKSPLYIFAESYGGKFAATLGVSALKAIEAGELKLQLGGVALGDSW ISPEDFVFTWGPLLKDLSRMNSNGLNSSNSLAVKIQQQLAEGKYEDATSTWRELEDVVFSNSNNVDFYNFLLDYVNDPVIGSTTQESKGFVAADRYSRYL STKMYPSPGSTGVRSTENLYDLMNGPIRQKLKIIPENVTWDGQGGLVFQALVGDFMKPRIQEVDELLAKGINVTIYNGQVDLICSTKGAEAWVNKLKWDG LQNFLSLDRSPLYCKSDNTTTKGFTSSYKNLFFYWILGAGHFVPVEQPCVSLQMVGNVTKSPNNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Potri.006G119300 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.003G075000 [exp]	2.23	0.7517
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.008G169300 [exp]	11.40	0.7401
					Potri.014G104100 [exp]	18.97	0.7106
AT5G54370			Late embryogenesis abundant (L...		Potri.011G127900 [exp]	81.74	0.6947
AT1G07650			Leucine-rich repeat transmembr...		Potri.018G145536 [exp]	128.59	0.6713
AT2G26230			uricase / urate oxidase / nodu...		Potri.010G242600 [exp]	178.35	0.6473	Pt-ASUR5.1
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.012G134100 [exp]	213.88	0.6316

Compare expression of checked genes

Potri.006G119300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.