Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51200 2461 / 0 EMB3142 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030088 [exp] 2734 / 0 AT5G51200 2380 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1) Lus10005726 [exp] 2685 / 0 AT5G51200 2356 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0585 [poplar] [flax] Nucleoporin_A PF11894 [poplar] [flax] Nup192 Nuclear pore complex scaffold, nucleoporins 186/192/205
Representative CDS sequence Show only first row Show all	>Potri.006G119600.3 pacid=42769967 polypeptide=Potri.006G119600.3.p locus=Potri.006G119600 ID=Potri.006G119600.3.v4.1 annot-version=v4.1 ATGGCATCCCCAAAACAACTCCTCTCCACCATCGAATCCACACTTCTAAATCCTTCGCCACCGTCAGCGGCGGAGAGAGTCGAACTAATGCACGCTATTC GCAGCTCTCTCCCGTCTCTGCAAGCGCTCCTCTTCTACCCGCCTCCCAAACCATCGGACCGCGCACAAGTCGTCCAGTCGAAAGAAGTTAGGCTGCCGGA TTCACCAGCAATCTCACTAGATGATCAGGATGTGCAAATTGCATTGAAATTGAGTGATGACCTCCATCTTAACGAAATAGAGTGTGTTCGATTGCTGGTT TCTGCCAATCAAGAGTGGGGTTTAATGGCACGGGAGCCATTAGAAATTCTGCGGCTTGCAGCAGGACTTTGGTACACCGAGAGACGAGATCTAATTACAG CCCTGCATATGCTATTAAGGGCTGTAGTGCTTGATCGAGGACTTGAAGATGATATCGTGTCAGACATCCAGAAGTATCTTGAAGATCTAATCAATGGTGG GCTTCGACAGCGATTGATTTCTCTAATAAAGGAACTCAATCTGGAAGAACCAGCTGGTTTTGGTGGGCCTCTTTGTGAGCATTATGTCCTTGATTCTAGA GGTGCTCTTGTTGAGCGTCAAGCTGTGGTTTGTAGAGAGAGATTGATACTTGGACATTGCCTTGTCCTCTCTGTTCTGGTTGTGCGGACAAGTCCAAAAG ATGTAAAGGATATTTTTAATTGTTTAAAAGATAGTGCAGCTGAACCTATGGAGGGCACCAACACATTAAAACATCAGATTACATTCAGTCTGCTTTTCTC TCTTGTAATTGCCTTCATATCAGATGCTCTGAGTGCCGTTCCTGATAAAGGATCTATCCTGTCTCATGATGCTTCTTTTAGAAAAGAATTTCATGAAATT GTGATGGCTGTTGGAAACAATCCAAACGTGGAGGGCTTTGTTGGTGTTATAAGACTTGCTTGGTGTGTGCATTTGATGTTAATAAATGATGGCGTTTCAG CTTCTTCATCAAATAATTCAGGCTATGTAAATTCGTGCCTTGAATTCATTTTCTCACACAATGTTTTTCAGTTTTTACTGGATAACATTCTTCGAACAGC AGCCTACCAGAATGATGACGAGGATATGATCTACATGTACAATGCTTATATGCACAAGCTGACTACTTGCTTACTCTCTCACCAACTTGTGAGGGATAAG GTAAAAGAATCTAAGGACAAGGCAATGAGCACGCTCAACTCATACCGTTTGGCTGTTTCACAAGATCTTATGCATGATAGCAACCCGGATTCACAACAGG CCACCGAAACTGGTCCTCTGCTGTTTGTCTCTCTGCTGGAGTTTGTGAGCGAAATTTATCAGAAAGAACCAGAGCTATTGTCTGGCAATGATGTTTTGTG GACATTTGTCAATTTTGCTGGAGAGGATCATACTAATTTTCAAACACTTGTAGCCTTTTTAAAAATGCTGAGTGCTCTGGCTTCAAGTCAAGAAGGTGCT GCAAAGGTTTATGAGTTACTTCAGGGAAACGCCTTCCGTTCTGTTGGGTGGAGCACTTTGTTTGATTGCTTAACTATATATGACGAGAAGTTCAAACAGT CAGTTCAGACAGCTGGAACCATGCTACCAGAGTTTCAGGAAGGGGATGCAAAAGCACTGGTTGCATATCTGGATGTTCTTCAAAAGGTTATTGAAAATGG GAATCCTGTGGATAGAAAAAACTGGTTTCCTGACATTGAACCATTGTTCAAGCTCCTTAGTTATGAAAATGTGCCTCCATATTTGAAGGGTGCTCTGCGG AATGCTATAGCTACTTTTGTTCATGTCTCTCCAGTCCTAAAAGATGCTATTTGGAGTTATCTTGAGCAGTATGATTTACCTGTGGTTGTTGGGGCTCAGG TTGGAAACATTGCACAGCCGACAGGAACACAGGTTTATGATATGCAATATGAGTTGAATGAAATAGAAGCAAGGAGAGAACGATATCCTTCGACAATATC TTTCCTTAACTTGTTAAATGCTCTCATTGGTGAGGAAAAAGATGTGAGCGATAGAGGGCGTAGATTTATAGGCATCTTTAGGTTCATATGTGATCATGTC TTTGGGCCATTCCCTCAGAGAGCCTATGCAGATCCTTGCGAGAAATGGCAGTTAGTTGTTTCTTGTCTTCAACATTTTCACATGATGTTGAGCATGTATG AAATTGAAGATGAGGACATTGACAGTGTTGTTGACCTGTCACAGCTTTCAACAGGCACGCAACCATCTTCGCTTCAGATGCAGCTTCCGGTCTTAGAGTT GTTAAAAGATTTCATGAGTGGCCGGATTGTTTTTCGAAATATCATGGGCATCCTTCTGCCAGGGGTAAATTCTATTATCACTGAACGGACTTCTCAAATT TATGGGCAACTGCTTGAAAAGGCTGTACAACTTTCTTTGGAGATTATAATTCTTGTCCTTGAAAAGGATTTACTAGTTTCTGATTATTGGCGTCCTCTAT ACCAGCCTTTGGATGTTATTCTTTCACAAGATCATAATCTAATTGTGGCATTGCTGGAGTATGTCAGATATGATTTTCTACCCAAAATTCAGCAATGCTC AATCAAAATCATGAGTATTCTAAGTTCCCGTGTGGTGGGGCTCGTACAGTTACTGTTGAAATCCAATGCTGCAAACTCTTTGGTTGAGGATTATGCAGCC TGCCTTGAGGTACGATCAGAAGAATGTCAGATTATAGAGAACAAGGTTGATGATCCAGGGGTTCTGATAATGCAGCTCCTAATAGATAACATTAGTCGGC CAGCTCCAAATGTTACACATTTACTGCTTAAATTTGATATTGACCACGCAGTTGAGCGGACAGTTCTGCAACCAAAGTTTCACTACAGTTGCTTGAAGGT TATTCTTGAAATATTGGACAGACTTTTAAAACCTGAAAAGAATGCAATGCTTCATGAGTTTGGTTTTCAGCTCCTTTATGAGTTGTCCGTGGACCCGCTT ACATGTGGCCCTACCATGGATTTGCTGAGCAAGAAAAAGTATCAATTCTTTGTAAAGCACCTTGATACTATTGGTATTGCTCCGCTTCCTAAACGGAATA GCAATCAGCCACTTCGCATCAGCTCCCTTCACCAGAGAGCATGGCTCTTGAAGCTTTTAGCTGTAGAATTGCACTCTGGTTATGTGGGTGGCCCCTCTCA TCGAGAAGCATGTCAGACCATACTTGCTCATCTTTTTGGACGGGATGTAATTGAAAGTGGGCCTGATCATGTAGTTTATGATTCCGTTATACTTCGAAAC GGCACTGAGCATGCTGGAACCCAGACAATAAGCAAGAATAAGGTTTTGGAGTTGCTCGAGGTTATCCAATTTCGATCTCCTGATACTACCATGAAGCTTT CCCAGATTGTTTCCAATATGAAGTATGATTTGATGGCAGAGGAAATACTTGGAGATCCAAGAACTTCAGGAAGGGGCGGTATCTACTACTATTCAGAGCG CGCTGATCGTCTGATTGACCTTGCTTCTTTCCGTGATAAGCTTTGGCAGAAATTCAATTCAGTCTATCCCCAGTTAAGTAACTTTGAAAATGAAGCTGAA CTCAATGATGTAAGAGAGACAATTCAACAGTTATTGAGATGGGGGTGGAAGTATAATAAGAACCTTGAGGAACAAGCTGCCCAACTTCATATGTTAACTG GCTGGTCACATATTGTTGAGGTGTCTGCATCCAGAAGAATACATTCACTTGAAAATCGATCTGACATTTTATATCGGGTTCTTGATGCCTCTCTAAGTGC TTCTGCTTCTCGAGACTGTTCATTGAGGATGGCATTTGTATTGAGTCAGGTTGCACTAACATGCATGGCTAAACTACGTGATGAAAGGTTCTTGTGCTCT GGTGGTTTAAATTCAGATAATATGACATGTCTTGATGTTATAACGGCAAAGAAACTATCAAATGGTGCCTGTCACTCAATATTATTTAAGCTTATAATGG CAATTCTGAGAAATGAATCATCAGAATCTCTGAGAAGACGTCAATATGCATTGCTGCTCGGCTATTTTCAGTATTGTCAGCATATGCTTGATCCAAATAT CCCAACATCAGTTATGCAATTTTTGATGCTCGAGGAGCAAGATAGTGAAGATCTAGATTTCCAGAAAATTGACAAAGATCAGGCAGAACTAGCTCGTACC AATTTTTCAATTATGAGGAAAGAAGCTCAGGCCATCTTGGATTTGGTAATAAATGATGCAACTAAAGGAAGCGAACCTGGGAAGACAATAGCGCTGTATG TTCTGGTTGCATTAATATGTATTGACCATGAGAGATACTTCTTAAGCCAACTTCAAAGTAGAGGATTTTTAAGGACTTGCCTAACGAGCATCAGCAATTT TTCAAACCAGGATGGCGGGCATTCATTGGATTCATTGCAGCGGGCAAGTACCCTTGAGGCTGAATTGGCATTACTGTTGAGGATTAGCTACAAATATGGG AAATCTGGGGCCCAGGTTTTGTTTTCCATGGGTGCCTTGGAGCATCTTGCATCATGCAGGGCAGTCAGTTTACAGGGATGTTTGAGGCGGTTTGACCGAA AGCTTCGTCGAGATGTTTCTGTAGATTTTGACAAACAATGCATGATTGTAACACCTATGTTGAGATTGTTGTTTTCTTTGACGTCATTGGTTGATACATC TGATATATTCGAGGTGAAGAATAAAATTGTTCGTGAAGTTATAGATTTTGTAAAAGGACATCAGATGCTGTTTGATCAAATTCTTCGTGAAGATATTTCC ACAGCTGATGAATTGACTGTGGAGCAGATCAATCTTGTTGTTGGCATACTTTGTAAGGTATGGCCCTATGAAGAGAGTGACGAGTTTGGTTTTGTTCAAG GTCTTTTCAGTATGATGCGTGCTCTTTTTTCTTGTGACTCTGGAGCTCCTACTGTTGGTAAATTGGCCCAATCTTCTGAGGTATCTCAGAATAAAAGCAA GGTAGAACTGAACTCGTTTCGGCTATGCTTCAGTCTGGGCTCTTACCTATATTTCTTAGTCACAAAAATGTCTCTGAGACTCCAGGTCTCAGACAGCTCC ATAGATTACCATTCCCCTGCTATGCTGCAGCAGCCCACATTGATGTTACTTGACTCTCTCCTCCGTTCAGTTGCAACTTCCCTTGAAATGGCTGCTGAGG AGAAATCCTTACTTCTTAATAAGATTCAAGATATAAATGAACTGTCAAGGCAGGAGGTGGATGAAATTATCAACATGTGTGTTATGCAAGAGTCTGTTTC TTCATCCGATGACATACAGAAGAGGAGGTATATCGCAATGATGGAAATGTCCCGTGTAGCTGGCGAAAGAGATCAGCTAATTACATTGTTACTTCCACTT GCAGAACATGTGCTGGATATCATCCTTGTCCATTTTCGTGAAGGGTCCATGGCATCTGATAATAGTGGAGCTACAAAAGCAGTTACATTTGGCACACACT CTGACCCCAGACAGGATCTATCTTGGATGTGCGGGATGTTGGTTCCCACGTTAGAACGACTTGAACTGTTGAGTGAGGATAAGGTCGGCCACAATCTGAA GGTGTTTCGAAGATTGGTGACATCCCTTAAAGAAATGGCAATCCAAAACCTGGCTTTATGA
AA sequence Show only first row Show all	>Potri.006G119600.3 pacid=42769967 polypeptide=Potri.006G119600.3.p locus=Potri.006G119600 ID=Potri.006G119600.3.v4.1 annot-version=v4.1 MASPKQLLSTIESTLLNPSPPSAAERVELMHAIRSSLPSLQALLFYPPPKPSDRAQVVQSKEVRLPDSPAISLDDQDVQIALKLSDDLHLNEIECVRLLV SANQEWGLMAREPLEILRLAAGLWYTERRDLITALHMLLRAVVLDRGLEDDIVSDIQKYLEDLINGGLRQRLISLIKELNLEEPAGFGGPLCEHYVLDSR GALVERQAVVCRERLILGHCLVLSVLVVRTSPKDVKDIFNCLKDSAAEPMEGTNTLKHQITFSLLFSLVIAFISDALSAVPDKGSILSHDASFRKEFHEI VMAVGNNPNVEGFVGVIRLAWCVHLMLINDGVSASSSNNSGYVNSCLEFIFSHNVFQFLLDNILRTAAYQNDDEDMIYMYNAYMHKLTTCLLSHQLVRDK VKESKDKAMSTLNSYRLAVSQDLMHDSNPDSQQATETGPLLFVSLLEFVSEIYQKEPELLSGNDVLWTFVNFAGEDHTNFQTLVAFLKMLSALASSQEGA AKVYELLQGNAFRSVGWSTLFDCLTIYDEKFKQSVQTAGTMLPEFQEGDAKALVAYLDVLQKVIENGNPVDRKNWFPDIEPLFKLLSYENVPPYLKGALR NAIATFVHVSPVLKDAIWSYLEQYDLPVVVGAQVGNIAQPTGTQVYDMQYELNEIEARRERYPSTISFLNLLNALIGEEKDVSDRGRRFIGIFRFICDHV FGPFPQRAYADPCEKWQLVVSCLQHFHMMLSMYEIEDEDIDSVVDLSQLSTGTQPSSLQMQLPVLELLKDFMSGRIVFRNIMGILLPGVNSIITERTSQI YGQLLEKAVQLSLEIIILVLEKDLLVSDYWRPLYQPLDVILSQDHNLIVALLEYVRYDFLPKIQQCSIKIMSILSSRVVGLVQLLLKSNAANSLVEDYAA CLEVRSEECQIIENKVDDPGVLIMQLLIDNISRPAPNVTHLLLKFDIDHAVERTVLQPKFHYSCLKVILEILDRLLKPEKNAMLHEFGFQLLYELSVDPL TCGPTMDLLSKKKYQFFVKHLDTIGIAPLPKRNSNQPLRISSLHQRAWLLKLLAVELHSGYVGGPSHREACQTILAHLFGRDVIESGPDHVVYDSVILRN GTEHAGTQTISKNKVLELLEVIQFRSPDTTMKLSQIVSNMKYDLMAEEILGDPRTSGRGGIYYYSERADRLIDLASFRDKLWQKFNSVYPQLSNFENEAE LNDVRETIQQLLRWGWKYNKNLEEQAAQLHMLTGWSHIVEVSASRRIHSLENRSDILYRVLDASLSASASRDCSLRMAFVLSQVALTCMAKLRDERFLCS GGLNSDNMTCLDVITAKKLSNGACHSILFKLIMAILRNESSESLRRRQYALLLGYFQYCQHMLDPNIPTSVMQFLMLEEQDSEDLDFQKIDKDQAELART NFSIMRKEAQAILDLVINDATKGSEPGKTIALYVLVALICIDHERYFLSQLQSRGFLRTCLTSISNFSNQDGGHSLDSLQRASTLEAELALLLRISYKYG KSGAQVLFSMGALEHLASCRAVSLQGCLRRFDRKLRRDVSVDFDKQCMIVTPMLRLLFSLTSLVDTSDIFEVKNKIVREVIDFVKGHQMLFDQILREDIS TADELTVEQINLVVGILCKVWPYEESDEFGFVQGLFSMMRALFSCDSGAPTVGKLAQSSEVSQNKSKVELNSFRLCFSLGSYLYFLVTKMSLRLQVSDSS IDYHSPAMLQQPTLMLLDSLLRSVATSLEMAAEEKSLLLNKIQDINELSRQEVDEIINMCVMQESVSSSDDIQKRRYIAMMEMSRVAGERDQLITLLLPL AEHVLDIILVHFREGSMASDNSGATKAVTFGTHSDPRQDLSWMCGMLVPTLERLELLSEDKVGHNLKVFRRLVTSLKEMAIQNLAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	0	1
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	1.00	0.9207
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	2.00	0.8727
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	3.74	0.8443
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	4.00	0.8592
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	4.47	0.8590	HEN2.1
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Potri.018G036600 [exp]	7.54	0.8692
AT2G41080			Tetratricopeptide repeat (TPR)...		Potri.016G075000 [exp]	10.48	0.8178
AT1G20670			DNA-binding bromodomain-contai...		Potri.009G167500 [exp]	13.67	0.8205
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.002G037300 [exp]	14.83	0.8328
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	15.29	0.8486

Compare expression of checked genes

Potri.006G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.