Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP97C4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53130 834 / 0 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) AT1G31800 462 / 1e-157 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) AT4G15110 383 / 4e-127 CYP97B3 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) AT2G44890 152 / 2e-40 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT3G14620 145 / 1e-37 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT2G45510 144 / 3e-37 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G26710 142 / 1e-36 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14630 137 / 1e-34 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT5G38450 127 / 2e-31 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT3G14680 123 / 6e-30 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088100 [exp] 457 / 3e-155 AT1G31800 921 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Potri.006G006200 [exp] 393 / 7e-131 AT4G15110 877 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Potri.010G139600 [exp] 152 / 5e-40 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 152 / 6e-40 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.017G114200 [exp] 147 / 3e-38 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.006G154500 [exp] 143 / 6e-37 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.004G100400 [exp] 140 / 1e-35 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.019G014407 [exp] 139 / 1e-35 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.014G072000 [exp] 135 / 4e-34 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023891 [exp] 839 / 0 AT3G53130 852 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10014399 [exp] 837 / 0 AT3G53130 850 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10020380 [exp] 452 / 6e-153 AT1G31800 905 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Lus10039040 [exp] 373 / 4e-123 AT4G15110 880 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Lus10009232 [exp] 148 / 1e-37 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10038896 [exp] 139 / 2e-35 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10026178 [exp] 137 / 1e-34 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10002108 [exp] 135 / 3e-34 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10037999 [exp] 137 / 4e-34 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10015018 [exp] 134 / 2e-33 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G119800.7 pacid=42770418 polypeptide=Potri.006G119800.7.p locus=Potri.006G119800 ID=Potri.006G119800.7.v4.1 annot-version=v4.1 ATGTCACTCACCTTCTCCGTCTCCTCTCTTCATCCTCTCTACAAGTACAAACCCATCTCCACCACCACTCTCCCTCCAAAACCTCGGTTTCTGTCCATCA AATCTTCTTTAGACGACGAAACCCAAAAACAAACCTCTTGGGTCAGCCCAGACTGGCTAACGTCCCTCACTCGCTCCTTATCCTTAGGCCGAAACGATGA TTCAGGGATTCCCATTGCCAGTGCTAAGCTTGAAGATGTGTCTGATCTTTTAGGTGGTGCTTTGTTTCTCCCTTTGTTTAAATGGATGAATGATTATGGG CCCATTTACCGTCTCGCTGCTGGCCCTAGAAATTTCGTTATAGTTAGTGACCCTGCTATTGCTAAACATGTTTTAAAAAATTATGGTACTAAGTATGCCA AAGGCCTTGTTGCTGAAGTCTCTGAGTTTCTCTTCGGCTCCGGTTTTGCTATCGCCGAGGGCCCACTTTGGACTGCAAGGCGCAGGGCAGTGGTGCCTTC ACTGCACAGGAAGTATTTGTCAGTGATAGTTGAAAGGGTGTTTTGCAAATGTGCAGAAAGGTTGGTGGAGAAGTTACAAGCTGATGCATTGAATGGCAAT GCTGTAAATATGGAAGAGAAGTTTTCTCAATTGACACTCGATGTCATTGGTCTTTCAGTATTCAACTACAATTTTGATTCATTAACTACTGATAGTCCTG TTATTGATGCTGTTTACACTGCATTGAAAGAGGCAGAGGCTCGTGCCACTGACCTTTTGCCATATTGGAAGATTGATGCTTTGTGTAAGATTATACCGAG GCAAATAAAAGCGGCAAAGGCGGTTATGGTTATTAGGCAAACTGTTGAGGAACTTATTGAGAAATGCAAAAAGATTGTGGAAATTGAGGGTGAGAAAATA AATGAGGAGGAATATGTGAACGACAATGATCCGAGCATTCTCCGGTTTTTGCTCGCCAGCAGGGAAGAGGTTTCAAGTGTACAGTTACGAGATGACCTAC TGTCAATGTTGGTTGCTGGCCATGAGACAACTGGTTCAGTATTGACTTGGACTTTGTATCTCCTGAGTAAGGATTCTTCTACATTGATGAAAGCACAAGA AGAGGTTGACCGAGTACTACAGGGAAGGCCTCCTACCTATGATGATATAAAGGATCTAAAGTATTTGACACGCTGCATAAATGAGTCCCTACGTCTCTAC CCACATCCTCCGGTCTTGATAAGAAGAGCTCAAGTTGCTGATGTGCTTCCTGGTAATTATAAGGTTAATGCTGGACAAGATATAATGATTTCAGTGTACA ATATTCATCACTCCTCCAAGGTCTGGGAGAGAGCAGAAGAGTTTGTGCCAGAGAGATTTGGCTTGGATGGCCCAGTGCCTAATGAATCAAACACAGATTT TAGGTTCATTCCTTTCAGTGGAGGACCCCGTAAATGCGTTGGTGACCAGTTTGCTTTACTTGAAGCCATTGTTGCACTTGCAATCTTTCTACAGAAAATT AACTTTGAGCTGGTTCCTGATCAGAACATCCGCATGACTACTGGAGCAACAATACACACTACAGATGGCCTGTACATGAAACTCAGCCAAAGAGACACTT AA
AA sequence Show only first row Show all	>Potri.006G119800.7 pacid=42770418 polypeptide=Potri.006G119800.7.p locus=Potri.006G119800 ID=Potri.006G119800.7.v4.1 annot-version=v4.1 MSLTFSVSSLHPLYKYKPISTTTLPPKPRFLSIKSSLDDETQKQTSWVSPDWLTSLTRSLSLGRNDDSGIPIASAKLEDVSDLLGGALFLPLFKWMNDYG PIYRLAAGPRNFVIVSDPAIAKHVLKNYGTKYAKGLVAEVSEFLFGSGFAIAEGPLWTARRRAVVPSLHRKYLSVIVERVFCKCAERLVEKLQADALNGN AVNMEEKFSQLTLDVIGLSVFNYNFDSLTTDSPVIDAVYTALKEAEARATDLLPYWKIDALCKIIPRQIKAAKAVMVIRQTVEELIEKCKKIVEIEGEKI NEEEYVNDNDPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKDSSTLMKAQEEVDRVLQGRPPTYDDIKDLKYLTRCINESLRLY PHPPVLIRRAQVADVLPGNYKVNAGQDIMISVYNIHHSSKVWERAEEFVPERFGLDGPVPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIFLQKI NFELVPDQNIRMTTGATIHTTDGLYMKLSQRDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	0	1	CYP97C4
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	2.44	0.9745	PtrcGR1,Pt-GR.3
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	3.16	0.9764
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Potri.004G129200 [exp]	3.46	0.9727
AT1G60230			Radical SAM superfamily protei...		Potri.010G040700 [exp]	4.47	0.9727
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	4.89	0.9743
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	6.48	0.9715
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	8.60	0.9559
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Potri.010G115000 [exp]	9.00	0.9596
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.001G067800 [exp]	9.38	0.9549	Pt-GLYRS.1
AT5G48545		HINT3	histidine triad nucleotide-bin...		Potri.002G248800 [exp]	9.48	0.9676

Compare expression of checked genes

Potri.006G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.