Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COMTL4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53140 575 / 0 O-methyltransferase family protein (.1) AT5G54160 242 / 2e-77 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 201 / 2e-61 O-methyltransferase family protein (.1.2) AT1G77520 200 / 6e-61 O-methyltransferase family protein (.1) AT1G33030 199 / 1e-60 O-methyltransferase family protein (.1) AT5G53810 176 / 1e-51 O-methyltransferase family protein (.1) AT1G77530 172 / 4e-50 O-methyltransferase family protein (.1) AT1G63140 172 / 5e-50 O-methyltransferase family protein (.1.2) AT1G21130 156 / 4e-44 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G76790 153 / 5e-43 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006400 [exp] 245 / 2e-78 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 241 / 6e-77 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 238 / 1e-75 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 236 / 4e-75 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 236 / 4e-75 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 236 / 4e-75 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 232 / 1e-73 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 232 / 4e-73 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 221 / 4e-69 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014400 [exp] 602 / 0 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10023892 [exp] 597 / 0 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1) Lus10032929 [exp] 253 / 2e-81 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 248 / 2e-79 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10009442 [exp] 213 / 7e-66 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10002667 [exp] 203 / 3e-62 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10005133 [exp] 203 / 3e-62 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002669 [exp] 199 / 8e-61 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10006146 [exp] 196 / 1e-59 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10014825 [exp] 164 / 2e-47 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.006G120000.7 pacid=42770312 polypeptide=Potri.006G120000.7.p locus=Potri.006G120000 ID=Potri.006G120000.7.v4.1 annot-version=v4.1 ATGGCATTAAACGAGGAGAGTGCAGAGAAGAGGAAGAGTGCAAGACTGGCGATCTTTGAGCTAGCCAACATGATTAGTGTTCCTATGTCTCTCAACGCTA TCGTCCGTCTAAAAGTCGCCGATGCTATCTGGCAAGGTGGCTCCAATGCTCCTCTTTCTGCCTCTCAGATCCTACAACGTATTGCCTCTACTGGATCTGA CCCTGAGAATTTGCAACGCATCCTTCGCATGCTCACTAGCTACGGTGTCTTTGAGGAACACCTCACCATCGAATCATCACCTCTTGATGGTTCTGTTTCC GAAAGGAAGTATTCACTCACGGAAGTCGGTAAAACCCTCGTTACTGATACTGAAGGACTCTCCTACGCGCCTTACGTGCTCCAGCATCACCAGGACGCGC TAATGAAAGCGTGGCCATTGGTGCACGAGGCAGTGTTAGATCCCACAACAGAGCCATTCGTGAAGGCTAATGGTGAGCCTGCATATGATTACTATGGGAA GCAGCCAGAAATGAATGAGTTGATGCTGAAGGCAATGTCAGGTGTATCTGTCCCGTTCATGGAAGCAATGTTGGATGGCTATGATGGGTTTAAAGGGGTG GAAAGATTGGTTGATGTAGGTGGGAGTGCAGGGGATTGTTTGAGGATGATCTTAAAAAAACATCCTGGTGTACGTCAAGGGATCAACTTTGATTTACCTG AGGTGGTTGCTAAAGCACCTATTATTCCTGGTGTTACAAATGTTGGTGGTGACATGTTCAAGTCAATTCCGGATGGTGATGCTATCTTCATGAAGTGGAT TTTGACGACATGGACAGACAATGAATGCAAGCTGATTATGGAGAACTGTTACAAGGCCCTTCCGGTGGGAGGGAAACTGATTGCTTGTGAACCGGTGCTG CCTAAGGATTCAGATGATAGTCACAGGACACGAGCTCTCTTAGAAGGTGACATATTTGTCATGACAATTTATAGGGCTAAGGGTAAGCACAGGACTGAAG AAGAATTTAAGCAGCTCGGTCAGTCTGTTGGTTTCTCTTATTTTCGTGCATTCTATGTCGATTATTTCTACACCGTTTTAGAGTTTCAAAAGTAA
AA sequence Show only first row Show all	>Potri.006G120000.7 pacid=42770312 polypeptide=Potri.006G120000.7.p locus=Potri.006G120000 ID=Potri.006G120000.7.v4.1 annot-version=v4.1 MALNEESAEKRKSARLAIFELANMISVPMSLNAIVRLKVADAIWQGGSNAPLSASQILQRIASTGSDPENLQRILRMLTSYGVFEEHLTIESSPLDGSVS ERKYSLTEVGKTLVTDTEGLSYAPYVLQHHQDALMKAWPLVHEAVLDPTTEPFVKANGEPAYDYYGKQPEMNELMLKAMSGVSVPFMEAMLDGYDGFKGV ERLVDVGGSAGDCLRMILKKHPGVRQGINFDLPEVVAKAPIIPGVTNVGGDMFKSIPDGDAIFMKWILTTWTDNECKLIMENCYKALPVGGKLIACEPVL PKDSDDSHRTRALLEGDIFVMTIYRAKGKHRTEEEFKQLGQSVGFSYFRAFYVDYFYTVLEFQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53140			O-methyltransferase family pro...		Potri.006G120000 [exp]	0	1	COMTL4
AT1G33265			Transmembrane proteins 14C (.1...		Potri.001G454900 [exp]	4.24	0.8031
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.016G093944 [exp]	4.24	0.7537
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Potri.006G208500 [exp]	16.73	0.7040
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.008G107200 [exp]	17.46	0.6741
AT1G20823			RING/U-box superfamily protein...		Potri.007G064401 [exp]	18.02	0.7085
AT4G11240		TOPP7	Calcineurin-like metallo-phosp...		Potri.001G098600 [exp]	18.70	0.6710	PP1.4
AT4G16745			Exostosin family protein (.1.2...		Potri.003G079000 [exp]	21.00	0.7438
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	24.00	0.6850
AT3G01740			Mitochondrial ribosomal protei...		Potri.001G335600 [exp]	24.49	0.7460
AT5G53490			Tetratricopeptide repeat (TPR)...		Potri.012G018100 [exp]	24.67	0.7476

Compare expression of checked genes

Potri.006G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.