Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36720 848 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 561 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 508 / 2e-166 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 507 / 4e-166 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14920 174 / 4e-44 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 160 / 6e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G58610 156 / 1e-38 PHD finger transcription factor, putative (.1) AT5G36740 153 / 1e-37 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 130 / 2e-30 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14980 119 / 6e-27 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097300 [exp] 1699 / 0 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 647 / 0 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 625 / 0 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G083600 [exp] 509 / 2e-166 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.010G087700 [exp] 176 / 9e-45 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G118600 [exp] 174 / 2e-44 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.005G211100 [exp] 174 / 5e-44 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 168 / 2e-42 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.009G072600 [exp] 168 / 2e-42 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027738 [exp] 1090 / 0 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 773 / 0 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 485 / 4e-157 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025315 [exp] 484 / 1e-156 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 381 / 1e-116 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10006110 [exp] 182 / 2e-46 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 179 / 1e-45 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042283 [exp] 179 / 2e-45 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 179 / 2e-45 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 167 / 3e-42 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G120200.4 pacid=42768117 polypeptide=Potri.006G120200.4.p locus=Potri.006G120200 ID=Potri.006G120200.4.v4.1 annot-version=v4.1 ATGAAGAGAGAGCTAGGTTTTGTGAGTTCACTCGGTCGGCCGACTCAGTCGAGTTCCTCCTGTACCCAACTTTCTGACGATGATCGCAGTAAGAGGTTCA AAGTTACTAAGGTAAATGGTTTCATTGTTTATACTCGAGTGAGGAAGACTAAAAATAACAATATATTAATTGCGGCCGAGGATGATGAGAGGCATATTAA GAGAATTAAGAGCTTAGATGATTCTAAAATTGATGTAGCCAATACAATAAATGCTTCGATTAGTGATGATGGTTTTAAGTGTCTTGAAGTTAATAAGAAG ACTGCAATTGGAGAGCGAAATAATTGCAATAACGTAGAAAAGGGGGTTTGTAAAGATGAGAGTAAAGGATCTCTGGCGGTCAAAGGGGGAAAAGAGATGA ACCTTGCTGTTTTTGGTGAGAATGGTGAGGTTAAGAGTAATGATAGGCCAAAGAGGGTTAGGAAGTCAAAATTGAAGATTAAGTTGCAACCAGTTGAGGT TACTGTTAAAGGACCAGAAGTTATAGAAGGTGAAGCTCTCTCTAGAGTGGATGTGGAGATGATAGCTGAAGGGAGTGCTTTGACGCCTCCAAAGAAGAAT TTAGAGTTGAAAATGTCTAAAAAGATTGCGTTGGAAAATGTACCAATGACAGTTAAAGAGCTGTTTGAGACTGGTTTGCTTGAGGGGGTACCTGTTGTCT ACATGGGTGGCAAGAAGTTTCAGGCGTTTGGTCTTCGGGGTACAATCAAAGATGCTGGCATTCTGTGCTCTTGTGCTTTCTGCAATGGACATAGAGTTAT TCCCCCATCCCAATTTGAGATTCATGCTATCAAACAATATAGACGTGCGGCCCAATACATATGTTTTGAGAATGGGAAGAGCCTGCTTGATGTATTGAAT GCATGCAGGACTGCTCCTCTGGATTCATTGGAAACAACAATTCAAAGTGCCATTAGTGGTTTGCCAGTGGAAAGAACTTTCACCTGTAAAAGATGCAAAG GTACCTTTCCTTCCATTTGTGTTGGAAAAATTGGGCCTTTATGCAACTTATGTGCAGAGTCAAAGGATTCTCATCCCACCCTAACTTTTGGATCTAGTAT AATATCTAGCTCATCAGAACAAGTTTTGGCCTTGGAGTACTTCAAACCGGCTTCATTGTCTACCTCCTCACAAGATAATACTCCACGGAAGAAAAAAAGA AAGTCATCAAAAACAGATTTGAACAAAAGTGCTCCAGCGCGTGTGTCCTCGAGAATTCAATCCAAGATTACACCAAAACCAGAAGAACAAGATTCCATCA CAAAACCTTCCAAAAGTGCTTCAGTATATCTCTCTTCACGAAAAAGGAAGTATAAGAAGATTTCACCAAGGTTGGTTTGCTTTTTTTATCCCATAGATAT ACTGTTTGGTTTAGTCATGATATCAAAGTCAGTTTTAATGTCCAAGTGCTTCAAAAATACATCAGGTGGCGTCTCTTCACAAAATCAGTGGAAAATAACA ACAAAAGACCAGCGGTTGCATAGATTGGTTTTTGAAGAAGGTGGATTGCCTGATGGAACTGAACTAGCATATTATGCTCGTGGGCAGAAATTGCTTGGCG GGTATAAAAGGGGCTTTGGAATACTTTGCCGTTGCTGCAATTGTGAGGTCAGCCCCTCAATGTTCGAAGCTCATGCAGGTTGGGCTACTCGCAAAAAACC CTATGCATATATTTACACATCAAATGGTGTGTCACTCCATGAATTGGCAATTTCTCTCTCAAAAAGTCGGAAGTATTCTTCCCGGGACAATGATGACCTA TGCATCATTTGTGCAGATGGTGGGAATCTTTTGCTTTGTGATGGATGCCCAAGGGCCTTCCATAAAGGATGTGCTTCTATACCAACTGTTCCTAGTGGTG ATTGGTATTGCCAGTATTGCCAGAATACATTTGAAAGGGAAAAGTTAGTTGAGCATAATGCGAATGCTTCTGCCGCTGGAAGGGATTCAGGAATCGATTC TATAGAACAGATAACCAAGAGATGCTTTCGTATTGTCAAAAACATAGAAGCTGAACTTACTGGATGTGCATTATGCAGAGGTTATGACTTTATGAGATCT GGTTTTGGTCCACGCACAATTATACTTTGTGATCAGTGTGAGAAAGAATTTCATGTTGGTTGTTTAAGGAGTCATAAGATGACAAATCTGAAGGAATTGC CAAAAGGCAACTGGTTTTGTTGTATGGATTGCAGTAGGATCCATTCTACTTTGCAGAAGTTGCTCATTCGTGGGGCTGAGAAACTCCCAGACTCTCTTTT GAATGATATAAAGAAGAAGCATGAGGAAAGAGGTTTAAACATCAGTAACAATATTGATGTGAGATGGACGCTTCTTAGTGGAAAAATTGCTTCTCCTGAA AATAAGCTTTTACTCTCACGGGCTCTTTCTATTTTTCAAGAATGTTTTGATCCTATAGTTGATTCAACAATTGGACGTGATCTTATTCCTTTGATGGTTT ATGGTAAGAACTCAAAGGGCCAAGATTATGGAGGAATGTACTGTGCAGTGTTAACAATCAACTCAAGTATTGTATCAGCGGGTATACTACGAGTTTTTGG GGAAGAAGTTGCTGAACTTCCCTTGGTTGCAACGAGGAATGGTGAACATGGCAAGGGCTACTTTCAACTGCTGTTCTCCTGCATCGAGAAGTTGCTGGCG TTTTTAAATGTGCAGAATCTTGTGCTTCCAGCTGCTGAAGAGGCAGAATCAATATGGACAGAAAAATTTGGTTTTCAGAAGATAAAACCGGAGCAGCTTA ACAAATATAGAAAAAGCTGCTGCCAGATGGTGAGATTTGAAGGGACATCTATGCTACAGAAAGCGGTTCCTACCTGTAGAATTGTTAATCAACGTACAAG TCCTTAG
AA sequence Show only first row Show all	>Potri.006G120200.4 pacid=42768117 polypeptide=Potri.006G120200.4.p locus=Potri.006G120200 ID=Potri.006G120200.4.v4.1 annot-version=v4.1 MKRELGFVSSLGRPTQSSSSCTQLSDDDRSKRFKVTKVNGFIVYTRVRKTKNNNILIAAEDDERHIKRIKSLDDSKIDVANTINASISDDGFKCLEVNKK TAIGERNNCNNVEKGVCKDESKGSLAVKGGKEMNLAVFGENGEVKSNDRPKRVRKSKLKIKLQPVEVTVKGPEVIEGEALSRVDVEMIAEGSALTPPKKN LELKMSKKIALENVPMTVKELFETGLLEGVPVVYMGGKKFQAFGLRGTIKDAGILCSCAFCNGHRVIPPSQFEIHAIKQYRRAAQYICFENGKSLLDVLN ACRTAPLDSLETTIQSAISGLPVERTFTCKRCKGTFPSICVGKIGPLCNLCAESKDSHPTLTFGSSIISSSSEQVLALEYFKPASLSTSSQDNTPRKKKR KSSKTDLNKSAPARVSSRIQSKITPKPEEQDSITKPSKSASVYLSSRKRKYKKISPRLVCFFYPIDILFGLVMISKSVLMSKCFKNTSGGVSSQNQWKIT TKDQRLHRLVFEEGGLPDGTELAYYARGQKLLGGYKRGFGILCRCCNCEVSPSMFEAHAGWATRKKPYAYIYTSNGVSLHELAISLSKSRKYSSRDNDDL CIICADGGNLLLCDGCPRAFHKGCASIPTVPSGDWYCQYCQNTFEREKLVEHNANASAAGRDSGIDSIEQITKRCFRIVKNIEAELTGCALCRGYDFMRS GFGPRTIILCDQCEKEFHVGCLRSHKMTNLKELPKGNWFCCMDCSRIHSTLQKLLIRGAEKLPDSLLNDIKKKHEERGLNISNNIDVRWTLLSGKIASPE NKLLLSRALSIFQECFDPIVDSTIGRDLIPLMVYGKNSKGQDYGGMYCAVLTINSSIVSAGILRVFGEEVAELPLVATRNGEHGKGYFQLLFSCIEKLLA FLNVQNLVLPAAEEAESIWTEKFGFQKIKPEQLNKYRKSCCQMVRFEGTSMLQKAVPTCRIVNQRTSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	0	1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	1.00	0.9378
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	3.87	0.9045
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	4.47	0.8875
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	4.47	0.9046	HAC901,Pt-HAC1.4
AT5G22450			unknown protein		Potri.008G020600 [exp]	4.69	0.8874
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	6.00	0.8882
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	6.92	0.8768
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	7.00	0.8918
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Potri.015G141700 [exp]	7.21	0.8812
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	8.24	0.9041

Compare expression of checked genes

Potri.006G120200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.