Plant FIBer expression Database

Potri.006G120700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26830 524 / 0 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
AT4G09760 182 / 4e-54 Protein kinase superfamily protein (.1.2.3)
AT1G71697 174 / 5e-51 ATCK1 choline kinase 1 (.1)
AT1G74320 170 / 3e-49 Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G193000
[exp]
187 / 1e-55 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1)
Potri.001G032000
[exp]
183 / 3e-54 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1)
Potri.005G197500
[exp]
172 / 1e-49 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3)
Potri.002G063700
[exp]
168 / 1e-48 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019424
[exp]
511 / 2e-177 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1)
Lus10028728
[exp]
176 / 2e-51 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3)
Lus10028696
[exp]
174 / 7e-51 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3)
Lus10026145
[exp]
175 / 2e-49 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1)
Lus10024127
[exp]
166 / 6e-47 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1)
Lus10005386
[exp]
133 / 6e-35 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF01636 APH Phosphotransferase enzyme family
Representative CDS sequence
>Potri.006G120700.1 pacid=42767105 polypeptide=Potri.006G120700.1.p locus=Potri.006G120700 ID=Potri.006G120700.1.v4.1 annot-version=v4.1
ATGGGGTCGCGTACTGAATCAGAGAGCGAGAGAGAGATCTGGAAAGCAATGGAGGTAGCAGAGGGAGCTAGAGGAGATAACTCGAGCTCTCATGTTCTTC
AATCTGCATCCCTCACCCTCGATACCTCCCTTTCCCTACCTGATTTGACTCCGCCTCTCATAGAGCTGTGCAAGGATTTGTTTAAGAAATGGTCAAGATT
GGATGATTCTTCCTTCTCTGTTGAGACGGTTTCCGGTGGCATAACAAATCTCTTGCTGAAGGTATCTGTGAAGGAAGAAGATGGAAATGAGGTGCCTGTA
ACTGTTAGATTATATGGTCCCAACACTGATTATGTTATCAATCGAGAACGCGAGCTTCAGGCCATCAAATACCTCTCGGCTGCAGGATTTGGTGCCAAGT
TGCTTGGAGTATTTCAAAATGGCATGGTCCAATCTTTTATAAATGCACGAACACTGATTCCGCAAGACATGAGAGAGCCGAAGCTGGCTGCTGAAATTGC
CAAGCAACTCCATAAATTCCATCGGGTGGATATTCCAGGCTCTAAAGAACCTCAGTTGTGGAATGACATCTTCAAGTTCTATGAAAATGCATCCACTCTT
CACTTTGATGATATTGAGAAGCGAAAAAAATATGAGACCATTTTGTTCAAGGAAGTTTACAATGAAGTTGTTGAAATCAAGGAATTGACAGATCTTCTCA
ATGCTCCAGTGGTTTTCGCTCATAATGACTTGCTTTCAGGGAATCTGATGCTTAATGACGATGAAGAGAAACTCTACATCATTGATTTCGAGTATGGATC
ATACAGTTACAGAGGTTATGACATTGGAAATCACTTCAATGAATATGCAGGCTATGATTGTGACTACAGCTTATACCCAAGTAAGGATGAGCAATATCAT
TTCTTCAGGCATTATTTACAACCTGATAAACCGCATGAGGTATCGGACAAAGACCTTGAAGCTCTATACGTAGAGTCAAACACTTACATGTTAGTTTCAC
ACTTATTTTGGGCTTTATGGGCACTAATCCAGGCCAAGATGTCTCCTATAGATTTTGATTATCTGGGTTATTTCTTCCTGCGATACGATGAATTCAAAAG
GCGGAAGGAAAAAGCTTGTTCATTGGCACGATCTTACCTCTCAGGACAAGAGAGTCGGTAG
AA sequence
>Potri.006G120700.1 pacid=42767105 polypeptide=Potri.006G120700.1.p locus=Potri.006G120700 ID=Potri.006G120700.1.v4.1 annot-version=v4.1
MGSRTESESEREIWKAMEVAEGARGDNSSSHVLQSASLTLDTSLSLPDLTPPLIELCKDLFKKWSRLDDSSFSVETVSGGITNLLLKVSVKEEDGNEVPV
TVRLYGPNTDYVINRERELQAIKYLSAAGFGAKLLGVFQNGMVQSFINARTLIPQDMREPKLAAEIAKQLHKFHRVDIPGSKEPQLWNDIFKFYENASTL
HFDDIEKRKKYETILFKEVYNEVVEIKELTDLLNAPVVFAHNDLLSGNLMLNDDEEKLYIIDFEYGSYSYRGYDIGNHFNEYAGYDCDYSLYPSKDEQYH
FFRHYLQPDKPHEVSDKDLEALYVESNTYMLVSHLFWALWALIQAKMSPIDFDYLGYFFLRYDEFKRRKEKACSLARSYLSGQESR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26830 EMB1187 embryo defective 1187, Protein... Potri.006G120700
[exp]
0 1
AT2G38790 unknown protein Potri.008G025100
[exp]
3.31 0.8856
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.010G220500
[exp]
10.67 0.8791
AT2G38790 unknown protein Potri.008G025200
[exp]
16.27 0.8527
AT1G68450 PDE337 PIGMENT DEFECTIVE 337, VQ moti... Potri.010G123700
[exp]
18.33 0.8445
Potri.005G129350
[exp]
18.38 0.8309
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.001G228300
[exp]
19.74 0.8792
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.005G143900
[exp]
24.08 0.8399 IFS1.45,CYP81S8
AT2G35930 PUB23 plant U-box 23 (.1) Potri.009G016200
[exp]
29.73 0.8632
AT5G24860 ATFPF1, FPF1 ARABIDOPSIS FLOWERING PROMOTIN... Potri.008G209300
[exp]
31.22 0.8214
AT2G03220 ATFUT1, ATFT1, ... MURUS 2, ARABIDOPSIS THALIANA ... Potri.001G034100
[exp]
46.86 0.8404

Potri.006G120700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.