Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36810 2557 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014405 [exp] 2476 / 0 AT2G36810 2370 / 0.0 ARM repeat superfamily protein (.1) Lus10023895 [exp] 2461 / 0 AT2G36810 2390 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G120800.3 pacid=42769840 polypeptide=Potri.006G120800.3.p locus=Potri.006G120800 ID=Potri.006G120800.3.v4.1 annot-version=v4.1 ATGGCTTCTTCAAGCTCCGGAAACTCAATAGCTGCATCAGAGGCTGTTCAGGTTTTGGTCTCTTCTCTGGCAGATGAATCCCCCACTGTTCGACAATCCT CCATGGCTTCTCTGAAGGACATCGCTAGCTTGAATCCGCTTCTGGTTCTTGATTGTTGCTATACGGTTTCTCGAGGCGGACGTCGACGATTTGGGAACAT GGCTGGGGTGTTTCAAGTGATGGCACTGGGAGTTAGTGCATTAAACGAAGGAGATGTTGATCCTTCTTTCATGGCAAAGCTTGCAAAGATTGCCACCACA GAAATGATCTCGTCTAAGGAACTAAATGCTGACTGGCAAAGGGCTGCAGCAGGCCTATTGGTTTCAATTGGTTCCCATTTGCCTGACCTTATGATAGAAG AAATTTTTCTTCATTTGTCAGGGCCGAGTTCAGCTTTGCCAGCTATGGTTCAAATACTCGCAGACTTTGCTTCGGCTAATGCTATACAGTTCATTCCACG ACTGAAAGGTGTGCTTTCCAGAGTTTTACCTATTCTTGGAAATGTGCGAGATGTCCATCGGCCAATATTTGCAAATGCATTTAGATGTTGGTGTCAGGCT GCTTGGCAATATAACATGGATTTCCCCTCACTTTCTCCTCTTGATGCTGATGTCATGTCGTTTTTAAATTCTGCCTTTGAGCTTTTATTGAGAGTATGGG CAACTTCAAAGGATCTTAAGGGACCTCAACTGCCTTGTCAGCTTCTTCGAAAAGCAAGGACTTCACAATTAAAGAATGTTCGCACGTCCTCTGTGGAAGC ATTGGGTCAGATGTTTGGTCTTGTCACCCGGACACAACTAAAGACAGCTTTACCCAGGCTTGTCCCTACTATACTGGAATTGTATAAAAAAGATCAAGAT ATCGCCCTACTTGCAACTTGTAGTCTTTACAATCTCCTAAATGCCTCGTTACTGTCAGAAACTGGTCCGCCTTTGCTTGATTTTGAGGATCTCACAGTTA TTCTATCAACACTCCTTCCGGTTGTTTGCTTTAATAATGATATCAAAGAGAATTCAGATTTTTCAGTGGGATTGAAGACCTATAATGAAGTTCAACGTTG TTTTTTAACAGTTGGCTTGGTATACCCTGATGATCTGTTTACATTCCTCTTAAATAAATGCCGGTTGAAGGAAGAGTCTTTGACTTTTGGTGCGCTATGT GTTTTAAAGCATCTCTTACCAAGGTCGTCTGAAGCTTGGCATAGTAAAAGGCCTTTGCTTGTTGAAGCTGTAAAGTCGTTGCTAGATGAGCAAAATTTTG GTGTTCGGAAGGCGTTGTCTGAGTTGATTGTAGTAATGGCCTCACACTGCTATTTGGTTGGTCCATCTGCGGAGTTGTTCATTGAATACCTTGTATGTCA TTGTGCTCTATCAGATCACAATAGAAATGATCCTGAGAACTCCAAGGTGAGGATAGGAGCCTTTTGTCCTACCAAGTTAAGAGCTGTGTGTGAGAAGGGT CTTCTTCTACTAACTATAACAATTCCTGAAATGGAGCATATTCTATGGCCTTTTCTATTGAAGATGATTATTCCACGATCTTACACCGCTGCTACTGCGA CTGTTTGCAGATGCATCTCAGAATTATGCAGAAACAGATCTTCTAATAGTAATAGTATGGTTAGTGAGTGCAAAGCTCGTGCTGATGTCCCGAGTCCAGA GGAGCTTTTTGCTCGCTTGTTGGTGCTTTTACATGATCCACTATCAATGGAGCAGCTGGCAACTCAGATTTTGACAGTCCTTTGTTATTTGGCACCTCTC TTCCCGAAGAATATCAACTTGTTTTGGCAAGACGAGATTCCTAAAATGAAGGCTTATGTCAGTGACACGGATGACCTAAAGTTGGATCCTTCATACCAGG AGACTTGGGATGACATGATAATCAATTTTCTTGCAGAATCATTGGATGTGATCCAAGACACTAATTGGGTGATCTCTCTCGGAAATGCTTTCACACACCA ATACGAGCTCTATACGTCGGATGATGAACATTCTGCTCTTCTCCACAGGTGCCTTGGAATGCTTCTACAGAAAGTTGATGACAGGGCTTATGTTCGAAAT AAAATTGATTGGATGTATAAACAAGCTAGCATTGCTAATCCAGCCAACAGGCTTGGTTTGGCAAAAGCCATGGGATTGGTTGCAGCTTCTCACTTGGATA CCGTGTTGGAAAAACTGAAAGTCATTCTGGATAATGTCGGGCAGAGTATTTTTCAAAGGTTGTTGTCTCTTTTCTCTGATATTTATAGAACAGAAGAGTC AGATGATATACATGCTGCCTTGGCTTTGATGTATGGTTATGCTGCACGATATGCTCCATCAACAGTTATTGAAGCCAGAATAGATGCCCTTCTTGGGACT AATATGCTTTCTCGGCTTCTTCATGTACGTCACCCTACAGCAAAGCAGGCTGTAATAACCGCTATTGATTTACTAGGCCGTGCTGTGATTAATGCTGCGG AAAGTGGTGCATCATTCCCTCTGAAGAAAAGAGACCAAATGCTTGACTATATTCTAACTTTGATGGGGAGAGATGATGATGGTTTTGTTGATTCCAGTCT TGAACTTCTGCGTACTCAGGCTCTGGCTTTAAGTGCCTGTACTACCTTGGTCTCTGTGGAGCCAAAGCTGACAATAGAAACAAGAAATTACATCATGAAG GCAACCTTGGGGTTCTTTGCTTTGCCTAATGAGCCAGTGGATGTTGTCAATCCCCTCATAGAAAACCTTATCACTCTCTTATGTGCAATTCTTCTAACAA GTGGAGAGGATGGAAGAAGCCGGGCCGAGCAGCTATTGCACATTATGAGACATACTGATCAGTATGTTTCTTCCTCTGAGGAGCATCAGAGGAAGAGAGG CTGTCTTGCAGTTTATGAGATGCTTCTCAAGTTTCGGATGCTTTGCATCACTGGACATTGTGCCCTAGGTTGCCATGGAAGTTGCACTCACAGAAAACAA ACTGACCGTACTCTTCATAGCACCATTTCCAATTTACCATCTGCATTTGTATTGCCAAGTCGTGAAGCCCTTTGTTTGGGAGAGAGGGTCATTAAATATC TTCCACGTTGTGCAGACACTAATTCTGAAGTTAGAAAAGTTTCTGCTCAGATTCTTGATCAACTATTCAGCCTCGCTCTTTCACTTCCAAAGCCTTCAGG TTTTAGCTTAAATGTGGATATAGAATTGCCCTACAGTGCCTTATCCTCTCTAGAGGATGTTATAGCTATCTTGAGAAGTGATGCTTCCATTGATCCATCA GAAGTTTTTAACAGAATCGTGTCCTCAATCTGTCTTTTATTGACAAAAGATGAGCTTGTTGCCACCCTGCAAGGCTGCTCAGCAGCTATATGTGATAAGA TCAAGCCATCAGCTGAAGGGGCTATACAAGCTATTATTGAGTTTGTTATGAAAAGGGGGAAAGAGCTAAGTGAAACGGACGTTTCAAGGACAACTCAATC ATTGCTCTCTGCTGTGGTTCATGTTACAGAGAAGCATTTGCGTCTGGAGACTCTTGGAGCTATTGCTTCTCTAGCTGAAAGTACTAGTTCAAATATTGTC TTTGATGAAGTATTGGCCACAGCTGGAAAGGATGTAGTTACGAAGGATATATCTAGACTACGAGGTGGCTGGCCAATGCAGGACGCATTCTATGCCTTTT CTCAACACGCAGTTCTTTCTTTTCAATTCCTGGAGCATCTGATATCATTCCTTAACCAGACTCCTGTTGTTAAGAGTGATTTGGAGAAAGGAGACAACTC TAGTCATTTAGCTGATGGTCAGATAGAGGATGACATTCTGCAAGCTGCTATGATTGCTCTCACTGCCTTTTTCAGAGGGGGTGGTAAAGTTGGAAAGAAA GCAGTAGAGCAAAGCTATGCCTCTGTTGTTGTTGCACTCACACTCCAATTTGGAAGTTGTCATGGTCTAGCTAGTTCTGGTCAGCATGAGCCATTGCGAG CTCTTCTAACAGCATTTCAAGCCTTTTGTGAGTGTGTCGGAGACCTTGAAATGGGAAAGATTTTGGCTAGAGATGGAGAGCAAAATGAAAAGGAGAGGTG GATCAATCTTATCGGAGAATTAGCTGGCAGCATATCTATAAAGAGGCCAAAAGAAGTTCGGACTATTTGTGTAATTTTAACGGAATCTTTAAACCGACGT CAAAAATTTCAAAGGGAAGCTGCTGCTGCGGCATTGTCGGTGTTTGTTCCCTATAGTGGGGGGTTTGATTCCCTGTTGGAGCAGATGGTTGAAGCATTGT GCCGGCATGTTTCGGATGAGTCTCCAACAGTTAGACGTCTTTGTTTAAGAGGGCTTGTCCAGATACCATCGCTTCATATTTATCAGCACACAATCCAGAT TCTTGGCATAATAGTGGCATTGCTTGATGATTTGGATGAATCTGTGCAATTAACTGCTGTTTCGTGCCTACTGATGATTCTTGAATCATCCCCAGATGAT GCAGTAGAGCCCATTTTGCTCAATCTTTCTGTTCGGCTCCGCAATCTTCAAATATCCATGGATGTGAAAATGCGAGCTGATGCCTTTGCAGCATTTGGAG CCCTGAGTAAATATGGTGTTGGGGCACAGCGTGAAATATTTCTTGAGCAGATACACGCTGCCATTCCTCGCCTGGTTTTGCACCTTCATGATGATGATCT TAGTGTGAGACAGGCTTGCCGAAACACTCTGAAAAGGCTTGCCCACTTGATGGAGATGGAAGAATCAACTGCTCTATTCAACTCGCACTATTTTACTTCT GATCACCGAAGTGACTATCAGGACTTTGTAAGAGATCTGACTAAGCAGTTTATCCAGCATCTTCCTTCCAGAGTTGATACTTACATGGCATCAACCATAC AGGCATTTGATGCACCTTGGCCAATAATACAGGCTAATGCTATTTACTTGGTCAGCTGCTTGGTATCACTTTCAGATGATCAGCGCATTTTAGCCCTTTA CCAAACACAGGTGTTTGGTACGTTGATGGGGAAGATGAGTCGATCACCAGACGCAATCGTGCGAGCTGCATGCTCTTCAGCACTTGGCCTATTACTAAAA TCAACCAATTCTCTAGTATGGAGAACAGCTCGACTAGATTTAAAGTGA
AA sequence Show only first row Show all	>Potri.006G120800.3 pacid=42769840 polypeptide=Potri.006G120800.3.p locus=Potri.006G120800 ID=Potri.006G120800.3.v4.1 annot-version=v4.1 MASSSSGNSIAASEAVQVLVSSLADESPTVRQSSMASLKDIASLNPLLVLDCCYTVSRGGRRRFGNMAGVFQVMALGVSALNEGDVDPSFMAKLAKIATT EMISSKELNADWQRAAAGLLVSIGSHLPDLMIEEIFLHLSGPSSALPAMVQILADFASANAIQFIPRLKGVLSRVLPILGNVRDVHRPIFANAFRCWCQA AWQYNMDFPSLSPLDADVMSFLNSAFELLLRVWATSKDLKGPQLPCQLLRKARTSQLKNVRTSSVEALGQMFGLVTRTQLKTALPRLVPTILELYKKDQD IALLATCSLYNLLNASLLSETGPPLLDFEDLTVILSTLLPVVCFNNDIKENSDFSVGLKTYNEVQRCFLTVGLVYPDDLFTFLLNKCRLKEESLTFGALC VLKHLLPRSSEAWHSKRPLLVEAVKSLLDEQNFGVRKALSELIVVMASHCYLVGPSAELFIEYLVCHCALSDHNRNDPENSKVRIGAFCPTKLRAVCEKG LLLLTITIPEMEHILWPFLLKMIIPRSYTAATATVCRCISELCRNRSSNSNSMVSECKARADVPSPEELFARLLVLLHDPLSMEQLATQILTVLCYLAPL FPKNINLFWQDEIPKMKAYVSDTDDLKLDPSYQETWDDMIINFLAESLDVIQDTNWVISLGNAFTHQYELYTSDDEHSALLHRCLGMLLQKVDDRAYVRN KIDWMYKQASIANPANRLGLAKAMGLVAASHLDTVLEKLKVILDNVGQSIFQRLLSLFSDIYRTEESDDIHAALALMYGYAARYAPSTVIEARIDALLGT NMLSRLLHVRHPTAKQAVITAIDLLGRAVINAAESGASFPLKKRDQMLDYILTLMGRDDDGFVDSSLELLRTQALALSACTTLVSVEPKLTIETRNYIMK ATLGFFALPNEPVDVVNPLIENLITLLCAILLTSGEDGRSRAEQLLHIMRHTDQYVSSSEEHQRKRGCLAVYEMLLKFRMLCITGHCALGCHGSCTHRKQ TDRTLHSTISNLPSAFVLPSREALCLGERVIKYLPRCADTNSEVRKVSAQILDQLFSLALSLPKPSGFSLNVDIELPYSALSSLEDVIAILRSDASIDPS EVFNRIVSSICLLLTKDELVATLQGCSAAICDKIKPSAEGAIQAIIEFVMKRGKELSETDVSRTTQSLLSAVVHVTEKHLRLETLGAIASLAESTSSNIV FDEVLATAGKDVVTKDISRLRGGWPMQDAFYAFSQHAVLSFQFLEHLISFLNQTPVVKSDLEKGDNSSHLADGQIEDDILQAAMIALTAFFRGGGKVGKK AVEQSYASVVVALTLQFGSCHGLASSGQHEPLRALLTAFQAFCECVGDLEMGKILARDGEQNEKERWINLIGELAGSISIKRPKEVRTICVILTESLNRR QKFQREAAAAALSVFVPYSGGFDSLLEQMVEALCRHVSDESPTVRRLCLRGLVQIPSLHIYQHTIQILGIIVALLDDLDESVQLTAVSCLLMILESSPDD AVEPILLNLSVRLRNLQISMDVKMRADAFAAFGALSKYGVGAQREIFLEQIHAAIPRLVLHLHDDDLSVRQACRNTLKRLAHLMEMEESTALFNSHYFTS DHRSDYQDFVRDLTKQFIQHLPSRVDTYMASTIQAFDAPWPIIQANAIYLVSCLVSLSDDQRILALYQTQVFGTLMGKMSRSPDAIVRAACSSALGLLLK STNSLVWRTARLDLK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	0	1
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Potri.010G028200 [exp]	4.47	0.7690
AT1G58230			binding (.1)		Potri.002G111000 [exp]	4.79	0.8055
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	5.29	0.7915
AT3G28430			unknown protein		Potri.006G073600 [exp]	5.47	0.7661
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Potri.010G229300 [exp]	6.16	0.7042
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	6.70	0.7938
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	7.34	0.8033
AT3G09760			RING/U-box superfamily protein...		Potri.006G129000 [exp]	7.54	0.7314
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	15.49	0.7527
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.005G215200 [exp]	18.89	0.7366

Compare expression of checked genes

Potri.006G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.