Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53180 1176 / 0 NodGS nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023900 [exp] 1219 / 0 AT3G53180 1148 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10014407 [exp] 513 / 2e-169 AT3G53180 530 / 1e-175 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023905 [exp] 399 / 3e-132 AT3G53180 403 / 2e-134 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023904 [exp] 298 / 1e-93 AT3G53180 285 / 3e-89 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10024005 [exp] 257 / 1e-77 AT3G53180 247 / 3e-74 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023906 [exp] 181 / 3e-53 AT3G53180 199 / 2e-60 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023907 [exp] 108 / 1e-27 AT3G53180 112 / 5e-30 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10033799 [exp] 84 / 3e-19 AT3G53180 104 / 2e-27 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023908 [exp] 0 / 1 AT3G53180 115 / 5e-31 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [poplar] [flax] GCS PF00120 [poplar] [flax] Gln-synt_C Glutamine synthetase, catalytic domain CL0034 [poplar] [flax] Amidohydrolase PF04909 [poplar] [flax] Amidohydro_2 Amidohydrolase CL0034 [poplar] [flax] PF16952 [poplar] [flax] Gln-synt_N_2 Glutamine synthetase N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G121000.1 pacid=42767056 polypeptide=Potri.006G121000.1.p locus=Potri.006G121000 ID=Potri.006G121000.1.v4.1 annot-version=v4.1 ATGGAGTTTTCAGAGTTAAGAGAAGCAATAGAGAAGGTGGGATTAGTAGACGCTCATGCTCACAACATTGTAGCTCTCGATTCTTCATTTTCTTTCATCA ATGCCTTCACTGAAGCCACTGGCACCGCTGCCTTGTCCTTTGCCCCTCACTCCCTCTCCTTCAAGAGAAATGTGAGGGAGATTGCGGAGTTGTATGGATG TGAGAATTCATTGAAAGGTGTTGAAGAATATCGCAGATCGTCAGGGTTGGAATCTAGTAGCTTGAAATGCTTTGAAGCTGCGAGGATATCTGCTATATTG ATTGACGATGGACTGAAATTGGATGAGAAGCTTGGTATTGAGTGGCACAGGAGTTTGGCTCCTTTTGTTGGTCGAATTTTGAGAATTGAAACCTTAGCTG AGGAAATTCTTGATAGTGAGATACCAGATGGCTGGACACTGGACAAGTTCACTGAAGCTTTTGTTAGAAAATTGAAATCAGTTGCTGATAAGATAGTTGG TTTGAAAAGCATAGCTGCATACCGCAGTGGTCTAGAAATTAATACAAATGTTGCTAGAAAAGATGCTGAGAAAGGCCTCACTGAAGTTTTACGTGATGGG AACCCTACTCGCATAGCAAACAAAAGCTTTATCGACTATATTTTCACGCTGAGTCTAGAGGTTTCTCTAAGCTTTGACTTGCCGATGCAGATACACACCG GTTTTGGAGACAAAGATTTGGATTTACGGTTGTCCAATCCTCTTCATCTTCGAATGCTTCTTGACGATGAGAGATTTTCCAAGTGTCGAGTTGTTCTCTT ACATGCATCATACCCATTTTCAAAGGAAGCATCATACCTTGCCTCTGTTTATCCCCAGGTGTACCTTGACTTTGGATTGGCTGTTCCTAAACTCAGTGTC CATGGCATGATATCTTCTGTCAATGAACTTTTGGAATTAGCCCCAATAAAGAAGGTTATGTTCAGCACAGATGGCTATGCATTTCCTGAAACTTACTACT TAGGTGCAAAGAAAGCACGCGAATGTTTATTTTCTGTTCTACGTGATGCATGCATTGATGGTGATCTCACATTAGCTGAAGCTATTGAAGCAGCTAAAGA CATTTTTGCTCTAAATGCTATTAAATTTTACAAGATTAATGTGGATGCAAATGCTTTTAGTTCAAAGGATACTGTTTCTGTCAACCCTGTGAAGATTGAG AGTAGAGCTCTAGAAAATAGCAGTTCACTTGTTCGTGTCATGTGGGTTGACACCTCTGGACAGCACCGATGTCGTGCTGTTCCAGTAAAGCGCTTCAGTG ACATTGTTAGGAAGAATGGTGTCGGCTTGACTCATGCATCTATGGGGATGAGTTCAGCTGCTGATTCTCCATCAGATGAGACTGGTCTTACTGGAGTAGG TGAGATCAGACTAATACCTGATGTAACAACCAGAAAGAAAATTCCATGGATGGAACGGCAGGAAATGGTTTTGGCTGACATGCATCTTAGACCTGGTGAA CCTTGGGAATATTGCCCAAGAGAGGCCTTACGAAGGGTTTTAAAAGTTTTAAAGGATGAGTTCGACTTGGTAATGGATGCAGGTTTTGAAAATGAGTTTG TGCTCTTGAAGAGTGTATCATGGGAAGGGAAAGAAGAATGGGTGCCCATTGACTCAGCTCCCTACTGCTCTACAGCATCATTTGATTTAGTTTCCCCCAT ACTTGATGAAATAGTTGGTGCTCTTCATTCCTTGGATATTACAGTGGAGCAGTTACATGCAGAATCTGGGAAAGGTCAGTTTGAATTGGCCATGGGACAC ACGACCTGCCCACTCTCTGCTGACAACTTAATATATACCCGTGAAGTTATTAGGGCTATTGCAAGGAAACATGGATTATTGGCAACTTTTGTTCCAAAGC TTGCATTAGATGACATTGGTTCTGGATCCCATGTGCACATTAGTTTGTTGAGAAATGGAGAAAATGTTTTTATGGCATCTGGTGGATCTTCCAAGCATGG GATTTCAAGCATTGGAGAGGAGTTTATGGCCGGGGTTTTGCATCATCTTCCTTCGATTTTGGCCTTCACAGCGCCAATTCCAAATAGTTATGATCGAATA CAACCAAACACATGGAGTGGAGCATACCAGTGTTGGGGAAAAGAAAACAGGGAAGCTCCATTAAGAACTGCTTGCCCACCTGGTATCATAGATGGTTTGG TGAGCAACTTTGAAATTAAATCTTTCGATGCATGTGCAAATCCATACTTGGGCTTGGCTGCTATAGGGGCTGCTGGCATAGATGGCCTTAGAAAGCATCT TCGTCTGCCTGAACCTATTGATAAAAACCCTTCTCTCTGTGCAAACCTTCCTAGATTGCCTCAATCACTTCCTGAATCTCTAGAAGCTCTTAAGAAAGAC AGTGTGTTGGAGGATCTTATTGGGGAAAAGCTTTTGGTTGCTATAAAAGGAGTTCGCAAGGCGGAGATTGACTATTACTCCCAGAATAAGGAAGCATACA AGCAATTGATACACCGTTATTAG
AA sequence Show only first row Show all	>Potri.006G121000.1 pacid=42767056 polypeptide=Potri.006G121000.1.p locus=Potri.006G121000 ID=Potri.006G121000.1.v4.1 annot-version=v4.1 MEFSELREAIEKVGLVDAHAHNIVALDSSFSFINAFTEATGTAALSFAPHSLSFKRNVREIAELYGCENSLKGVEEYRRSSGLESSSLKCFEAARISAIL IDDGLKLDEKLGIEWHRSLAPFVGRILRIETLAEEILDSEIPDGWTLDKFTEAFVRKLKSVADKIVGLKSIAAYRSGLEINTNVARKDAEKGLTEVLRDG NPTRIANKSFIDYIFTLSLEVSLSFDLPMQIHTGFGDKDLDLRLSNPLHLRMLLDDERFSKCRVVLLHASYPFSKEASYLASVYPQVYLDFGLAVPKLSV HGMISSVNELLELAPIKKVMFSTDGYAFPETYYLGAKKARECLFSVLRDACIDGDLTLAEAIEAAKDIFALNAIKFYKINVDANAFSSKDTVSVNPVKIE SRALENSSSLVRVMWVDTSGQHRCRAVPVKRFSDIVRKNGVGLTHASMGMSSAADSPSDETGLTGVGEIRLIPDVTTRKKIPWMERQEMVLADMHLRPGE PWEYCPREALRRVLKVLKDEFDLVMDAGFENEFVLLKSVSWEGKEEWVPIDSAPYCSTASFDLVSPILDEIVGALHSLDITVEQLHAESGKGQFELAMGH TTCPLSADNLIYTREVIRAIARKHGLLATFVPKLALDDIGSGSHVHISLLRNGENVFMASGGSSKHGISSIGEEFMAGVLHHLPSILAFTAPIPNSYDRI QPNTWSGAYQCWGKENREAPLRTACPPGIIDGLVSNFEIKSFDACANPYLGLAAIGAAGIDGLRKHLRLPEPIDKNPSLCANLPRLPQSLPESLEALKKD SVLEDLIGEKLLVAIKGVRKAEIDYYSQNKEAYKQLIHRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Potri.006G121000 [exp]	0	1
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Potri.001G090200 [exp]	8.71	0.8913
AT3G59710			NAD(P)-binding Rossmann-fold s...		Potri.013G127700 [exp]	12.40	0.8969
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.004G205500 [exp]	13.11	0.8880	Pt-NIN.1
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	19.59	0.8568	Pt-AUX28.3
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.003G147400 [exp]	23.23	0.8733
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246500 [exp]	25.21	0.8900
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.018G062100 [exp]	26.26	0.8353	Pt-CYP711.2
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.009G108500 [exp]	28.98	0.8047
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	29.24	0.8589	HT1.1
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Potri.016G112600 [exp]	30.16	0.8105	SQD2.1

Compare expression of checked genes

Potri.006G121000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.