Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21540 1246 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G16750 99 / 9e-21 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G08390 92 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 91 / 3e-18 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 86 / 8e-18 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 88 / 1e-17 TAF5 TBP-associated factor 5 (.1) AT3G49660 84 / 4e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 81 / 2e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G21390 80 / 6e-15 Coatomer, alpha subunit (.1) AT1G62020 80 / 7e-15 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020200 [exp] 96 / 3e-20 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 92 / 5e-20 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 93 / 3e-19 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.013G079600 [exp] 89 / 7e-18 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 89 / 1e-17 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 88 / 2e-17 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 85 / 2e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 86 / 9e-17 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G047300 [exp] 84 / 2e-16 AT5G16750 794 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023903 [exp] 1312 / 0 AT3G21540 1223 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10012475 [exp] 1161 / 0 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10033802 [exp] 988 / 0 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10039636 [exp] 91 / 2e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001301 [exp] 94 / 3e-19 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10024447 [exp] 92 / 9e-19 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10014674 [exp] 88 / 2e-18 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 87 / 3e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 90 / 4e-18 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003487 [exp] 87 / 5e-18 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF04003 [poplar] [flax] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Potri.006G121100.1 pacid=42769182 polypeptide=Potri.006G121100.1.p locus=Potri.006G121100 ID=Potri.006G121100.1.v4.1 annot-version=v4.1 ATGGTCAAGTCGTACCTAAGGTACGAGCCAGCGTTATCGTTTGGTGTAATAGCATCGGTGGAAGGTAACATTGCATACGACAGCTCAGGGAAGCACTTAC TCACGCCGGCGCTCGAGAAGGTCGGTGTTTGGCACGTCCGTCAAGGCATCTGCACCAAAACCCTAGCTCCTTCTACCTCTTCTTCTCGCAGTGGTCCCTC TCTCGCTGTCACTTCTATCGCACCCTCGCCTTCATCCTCCTCTCTGGTAGCGGTTGGATATGCTGATGGTAGTATAAGAATTTGGGATAGTGAGAAAGGA ACCTGTGAGACCACACTGAATGGCCACAAAGGGGCAGTGACTGTTTTACGTTATAACAAGCCTGGGGCTTTGCTTGCATCTGGAAGTAAAGATAATGATG TTATACTGTGGGATGTTGTTGGAGAAACAGGCCTTTTTCGCCTTCGTGGGCATCGTGACCAGGTTACTGACCTTGTTTTCTTGGAGTCCACTAAAAAACT TGTTAGTTCTTCAAAAGACAAATTTTTGAGAGTATGGGATCTAGAAACACAGCACTGTATGCAAATAATTAGTGGACACCACAGTGAAATTTGGGCAGTG GATGCTGACCCAGAGGAGAGATACTTAGTCACTGGTTCAGCAGATCCAGAAATTCGATTTTATACAATCAAGCATGACTCAGAAAATACACAAGCCATAT CCAATGAAAAAGGAGCTGTAATTGTGAACAGTGGAGATATGCCTACTCAAAATAAATGGGAAGTCCTGAAGTTGTTTGGTGAGATTAAGAGGCAAAGCAA AGATAGAGTCGCAACTGTGAGATTCGACAAGTCTGGAAGTTTACTGGCTTGTCAAGTGGCTGGGAAGACTGTGGACATATTCCATGTACTAGGAGATGTC GTAGCAAGCCGTAAAGCTAAACGCAGGCTTCATAGGAAGAAAGAGAAGAAATCTGCCAAGGGGGCACTTGGGACAACTGAATCTAAAGAGGATACAAAAC ATGCATCCGAAGAAGATGGAAATACCCCCACAGTTACCGTTTCTGATGTTTTTAAACATCTTCAAACTGTTCGAGCTGGCAAAAAGATCTGTTCCATTTC ATTTAGTCCAATTACTCCAAAGAACTCCTTGGCTACTTTAGCTTTGTCTTTGAATAATAATCTATTGGAATTTTACTCCATTGAAAGCAGCACAACCACA AAAACTCTAGCAATTGAGCTACAAGGGCACCGTTCTGATGTCAGAAGTGTTACACTCAGTTCAGACAATACTCTTTTGATGTCAACCAGTCACAATGCTG TAAAGATTTGGAATCCAAGTACTGGTTCTTGCCTTAGGACCATTGATTCTGATTATGGACTATGTGGTTTAATCATCCCACAGAACAAGTATGCTTTTGT TGGAACTAAAAGTGGAAAGATAGAGGTAATTGACATTGGTAGCGGCACTTGCATTGACACATTGGAAGCTCATGGTGGGCCTGTACGGTCTATTGCTGCT CTTCCAAATGAAAATGGTTTTGTCACAGGCAGCGCTGATCACGATGTTAAGTTCTGGGAGTATCAAATCAAACAGAAACCTGGTCAAGACTCGAAGAACC TTGTTTTGTCAAATGCAAGGGCTATGAAGATGAATGATGATGTTCTCGTGGTTGTAGTTAGCCCTGATGCTAAATATATTGCTGTTGCACTGTTGGATTG TACAGTCAAGGTTTTCTTCTTGGATTCGTTCAAATTTTTCCTTTCATTATATGGTCACAAGCTGCCTGTGCTATGTATGGATGTTTCATCAGATGGAGAT TTGATTGTTACTGGATCCGCAGACAAAAACTTGAAGATTTGGGGTTTGGATTTTGGTGACTGCCACAAATCCCTTTTTGCTCATGGTGATAGTGTCATGG CAGTGCAATTTGTGCGGAATACCCATTATATGTTTAGCGTTGGAAAAGATCGGCTTGTAAAATACTGGGATGCTGATAAATTTGAGCTTCTTTTAACCCT TGAGGGACATCATGCAGATGTTTGGGGTCTTGCAATCAGTAGTCGTGGTGATTTTCTTGTTACAGGATCCCATGATCGATCACTACGTCGTTGGGATCGT ACTGAGGAGCCTTTTTTCATTGAGGAGGAGAAAGAGAAAAGGTTGGAAGAAATGTTTGAAGCTGACATTGAGAATGCATTTGAAAACAAGCATGTGCCTA GAGAAGAACTTCCAGAGGAGGGAGCTGTTGCCTTGGCAGGGAAGAAAACACAAGAAACCCTTTCTGCAACCGACTTAATTCTTGATGCTTTAGATGTAGC AGAGGTAGAATTGAAGCGTATTGCTGAACATCAGGAGGAGAACACCAAGGGAAATGTTACAGAATACCAACCAAATGTTATCATGCGTGGGCTCTCTCCA TCTAATTATGTTCTCCATGCTTTCACAAATGTTCACACCAATGATCTGGAGCAGACATTACTGGCTTTGCCATTCTCAGATGGCTTGAAGCTTCTGTCTT ACTTTAAGGACTGGACCTCAAATCCCGATAAGGTTGAGCTTGTTTGCAGGCTTGCTACTGTGCTATTGCAGACACATTACAATCAGTTGGTTACAACCCC AGCTGCAAGACCGGTGTTGACTCTTCTCAAAGACATTCTTTATGAAAGAGTCAAGGAATGCAAAGATACTCTGGGTTTCAATCTTGCTGCGATGGATCAT CTCAAGCAATTGATGGCTTCAAGATCAGATGCACTCTTTAGAGATGCAAAAGCAAAGTTACTAGAAATCCGCTCACAGCAGTCAAAACGTCTGGAAGCAG GGACTGATACAAGAGAAGAAAAACGTAGAAAGAAAAAAAAGAAAACATCAAGTGACATGCATGCTTTGACAGGATTTTGA
AA sequence Show only first row Show all	>Potri.006G121100.1 pacid=42769182 polypeptide=Potri.006G121100.1.p locus=Potri.006G121100 ID=Potri.006G121100.1.v4.1 annot-version=v4.1 MVKSYLRYEPALSFGVIASVEGNIAYDSSGKHLLTPALEKVGVWHVRQGICTKTLAPSTSSSRSGPSLAVTSIAPSPSSSSLVAVGYADGSIRIWDSEKG TCETTLNGHKGAVTVLRYNKPGALLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDLVFLESTKKLVSSSKDKFLRVWDLETQHCMQIISGHHSEIWAV DADPEERYLVTGSADPEIRFYTIKHDSENTQAISNEKGAVIVNSGDMPTQNKWEVLKLFGEIKRQSKDRVATVRFDKSGSLLACQVAGKTVDIFHVLGDV VASRKAKRRLHRKKEKKSAKGALGTTESKEDTKHASEEDGNTPTVTVSDVFKHLQTVRAGKKICSISFSPITPKNSLATLALSLNNNLLEFYSIESSTTT KTLAIELQGHRSDVRSVTLSSDNTLLMSTSHNAVKIWNPSTGSCLRTIDSDYGLCGLIIPQNKYAFVGTKSGKIEVIDIGSGTCIDTLEAHGGPVRSIAA LPNENGFVTGSADHDVKFWEYQIKQKPGQDSKNLVLSNARAMKMNDDVLVVVVSPDAKYIAVALLDCTVKVFFLDSFKFFLSLYGHKLPVLCMDVSSDGD LIVTGSADKNLKIWGLDFGDCHKSLFAHGDSVMAVQFVRNTHYMFSVGKDRLVKYWDADKFELLLTLEGHHADVWGLAISSRGDFLVTGSHDRSLRRWDR TEEPFFIEEEKEKRLEEMFEADIENAFENKHVPREELPEEGAVALAGKKTQETLSATDLILDALDVAEVELKRIAEHQEENTKGNVTEYQPNVIMRGLSP SNYVLHAFTNVHTNDLEQTLLALPFSDGLKLLSYFKDWTSNPDKVELVCRLATVLLQTHYNQLVTTPAARPVLTLLKDILYERVKECKDTLGFNLAAMDH LKQLMASRSDALFRDAKAKLLEIRSQQSKRLEAGTDTREEKRRKKKKKTSSDMHALTGF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	0	1
AT1G15420			unknown protein		Potri.001G173300 [exp]	1.41	0.9009
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.007G068800 [exp]	2.23	0.8723
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	3.16	0.8824
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	5.29	0.8680
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	6.00	0.8719
AT3G18600			P-loop containing nucleoside t...		Potri.001G250700 [exp]	8.12	0.8098
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	8.24	0.8751
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195300 [exp]	9.32	0.8173
AT5G41190			unknown protein		Potri.003G124700 [exp]	10.58	0.8615
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	11.83	0.8407

Compare expression of checked genes

Potri.006G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.