Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09920 1230 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 749 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 736 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G41210 589 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G07960 587 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 586 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G77740 520 / 6e-174 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 500 / 5e-166 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT2G26420 498 / 8e-166 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 265 / 3e-80 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211200 [exp] 760 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 722 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.002G088100 [exp] 624 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G027900 [exp] 607 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 601 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.005G172800 [exp] 597 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 579 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.004G139900 [exp] 453 / 4e-148 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 444 / 2e-144 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014408 [exp] 1339 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 1329 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 1253 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 1251 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10001377 [exp] 769 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10015456 [exp] 767 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 710 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 705 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10029661 [exp] 575 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10039011 [exp] 555 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.006G121200.11 pacid=42768520 polypeptide=Potri.006G121200.11.p locus=Potri.006G121200 ID=Potri.006G121200.11.v4.1 annot-version=v4.1 ATGTCTGGCGCTGAGGTTATTGTTGGTAATGTGGAACGAGCACTGACTTATGCAGACAGGACGAAGTCTGTTGATGCCATCTCTGACAGAGACCGCTCAT CTATATCAATCAATGGTGAATCTTTCCGTGCTTCATCTGAAAATTTAGCCTTTAGAGTTGGGGAGCTTGGTCTTCCCAATGGGGAATCATATTCTGGATC ATTGCTCGGCAATGCACCTGAGGGGAATGGGAAATATGTATGGTCGGATGGTTGTGTATATGAAGGTGAATGGAGAAGGGGAATGAGGCATGGGAATGGA AAAATTCAGTGGCCTTCTGGAACTGCTTATGAGGGTGAATTTTCAGGTGGATACATGCATGGTGCAGGGACCTACGTAGGTTCCAATAACTTGACATATA AAGGAAGATGGCGTTTGAATCTCAAGCATGGATTGGGATACCAGGTTTATCCTAACGGAGATATCTTTGAGGGCTCTTGGATACAAGGAGGTCCAGAGGG TCCAGGCAAGTATACCTGGGCTAATAGGAATGTCTATCATGGGGATATGAAAGGGGGTAAAATGACAGGGAAAGGGACTCTTACATGGACTAATGGGGAT TCATTTGAAGGAAGCTGGTTAAATGGTATGATGCATGGATTTGGAGTGTATACATGGAGCGATGGCGGTTGCTATGTTGGAACTTGGACGCGTGGTTTGA AGGATGGAAAAGGATCGTTTTATCCAAAAGGGAGCCGGTTTCAAGCTGTAGAAGAATGGTACCTCAATGCTCTAAGAAAAAGAGGGGTACTTCCAGATCT AAGAAAGCAAAACCACGCACTTATTCATCATGCATCTTCGGTCAATATGGGAAATGTCAAGGTAGGTGAGAACCAGGGATCTCGTCATAATTCATCTGAT AAACTATCCAAGGGAAACTTGTTAACTTTGGAGCAGTCTCGAAACAAAAATGTTTCTCTGGAAAGGCGCTGGAGTCTTGAGGTATATATTGAAAAGGTTA TAGGACATGACTCATCATTAGATTTATCTGAAGGCTTAGGGAAGGAGTTTGAAACAAACACTCCACCAATCTTGGAACGAGAATATATGCAAGGTGTTCT AATTAGTGAACTTGTGTTGAATAGTAGTTTTTCTTCATCATCCAGAAGAACAAAAAGGCGACAGAAGAAACTTGCAAAAGAGGTCAAGAGGCCTGGTGAA GCTATCATTAAAGGGCATAGGAGTTATGATTTGATGCTCAGTTTGCAGCTTGGAATAAGGTATACTGTGGGGAAAATTACACCTGTACAGAGACGAGAAG TTCGTGCTTCAGATTTTGGCCCGAGAGCAAGCTTTTGGATGAATTTTCCGAAAGATGGATCACAATTGACACCTCCTCACCAATCAGAGGATTTTAAATG GAAAGACTACTGCCCAATGGTTTTCAGGAATTTGAGAGAGATGTTCAAGATCGATTCGGCTGACTACATGATGTCCATTTGTGGAAATGATGCTCTTAGA GAACTTTCCTCTCCTGGGAAAAGTGGTAGCATCTTTTTCCTATCTCAGGATGACCACTTCATGATTAAGACACTTCGGAAGTCTGAAGTAAAGGTGCTTC TGAAAATGTTGCCGGACTATCATCATCATGTGAGGTCGCATGAGAATACACTCATAACAAAATTCTTTGGTCTTCACAGGATTAAACCTTCAAGCGGTCA AAAGTTTCGCTTTGTAGTGATGGGAAATATGTTCTGCACAGAATTAAGGATCCATCGAAGGTTTGATTTGAAAGGGTCATCTTTAGGACGGTCTACAGAG AATGTTGAGATAGAAGAGAACACAACACTTAAAGATTTGGATCTAAACTACTGCTTCTATTTGGAACCTTCTTGGCGTGAAGCTTTATTACAGCAGATTG AGATTGATAGCAAATTTTTGGAAGTGCAGCACATCATGGATTACAGCCTTTTGCTGGGTGTGCATTATCGAGCCCCACAACACTTACGGTCTTTAATGTC TTACAATCGAAGTATAAGTGCTGAAGGATTGGGAGTTCTAGCAGAGGAAGATACTATAGAGGATGAGAACTACCCACAAGGTCTCGTCTTGGTTCCTCGA GGAACAGGTGATGATAGTGTTGTCGTGGGTCCTCACATTAGAGGTAGCAGATTACGAGCATCATCAGCTGGTGATGAGGAAGTGGATCTCCTCCTTCCCG GCACAGCAAGGCTCCAAATCCAGCTTGGGGTGAACATGCCTGCCAGGGCAGAGCAGATTCCAGGGGAAGAGGAAAAACAGACCTTTCATGAAGCATATGA TGTTGTTCTGTACCTAGGCATCATTGATATCTTGCAAGAATACAACATGAGTAAGAAGATTGAGCACGCATACAAATCCCTTCAATTTGATTCCTTGTCA ATCTCGGCTGTGGATCCAACTTTCTACTCCAGACGCTTCCTAGAGTTCATTCAAAAGGTTTTCCCTCCTAATGTCATTACAAGTTGA
AA sequence Show only first row Show all	>Potri.006G121200.11 pacid=42768520 polypeptide=Potri.006G121200.11.p locus=Potri.006G121200 ID=Potri.006G121200.11.v4.1 annot-version=v4.1 MSGAEVIVGNVERALTYADRTKSVDAISDRDRSSISINGESFRASSENLAFRVGELGLPNGESYSGSLLGNAPEGNGKYVWSDGCVYEGEWRRGMRHGNG KIQWPSGTAYEGEFSGGYMHGAGTYVGSNNLTYKGRWRLNLKHGLGYQVYPNGDIFEGSWIQGGPEGPGKYTWANRNVYHGDMKGGKMTGKGTLTWTNGD SFEGSWLNGMMHGFGVYTWSDGGCYVGTWTRGLKDGKGSFYPKGSRFQAVEEWYLNALRKRGVLPDLRKQNHALIHHASSVNMGNVKVGENQGSRHNSSD KLSKGNLLTLEQSRNKNVSLERRWSLEVYIEKVIGHDSSLDLSEGLGKEFETNTPPILEREYMQGVLISELVLNSSFSSSSRRTKRRQKKLAKEVKRPGE AIIKGHRSYDLMLSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMNFPKDGSQLTPPHQSEDFKWKDYCPMVFRNLREMFKIDSADYMMSICGNDALR ELSSPGKSGSIFFLSQDDHFMIKTLRKSEVKVLLKMLPDYHHHVRSHENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSTE NVEIEENTTLKDLDLNYCFYLEPSWREALLQQIEIDSKFLEVQHIMDYSLLLGVHYRAPQHLRSLMSYNRSISAEGLGVLAEEDTIEDENYPQGLVLVPR GTGDDSVVVGPHIRGSRLRASSAGDEEVDLLLPGTARLQIQLGVNMPARAEQIPGEEEKQTFHEAYDVVLYLGIIDILQEYNMSKKIEHAYKSLQFDSLS ISAVDPTFYSRRFLEFIQKVFPPNVITS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Potri.006G121200 [exp]	0	1
AT3G05900			neurofilament protein-related ...		Potri.005G001700 [exp]	1.41	0.6664
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.016G123800 [exp]	4.69	0.6296
AT3G11760			unknown protein		Potri.006G201200 [exp]	12.84	0.5727
AT3G54500			unknown protein		Potri.001G025100 [exp]	28.56	0.5272
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.004G159300 [exp]	32.00	0.5770
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G194200 [exp]	55.85	0.5313	CESA2.6
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.007G032500 [exp]	56.98	0.5250
AT5G09760			Plant invertase/pectin methyle...		Potri.007G107300 [exp]	129.38	0.4542
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.016G129000 [exp]	135.99	0.4385
AT1G28680			HXXXD-type acyl-transferase fa...		Potri.004G053500 [exp]	159.08	0.4478

Compare expression of checked genes

Potri.006G121200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.