Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32600 373 / 2e-130 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097600 [exp] 421 / 1e-148 AT2G32600 370 / 2e-129 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021506 [exp] 388 / 1e-135 AT2G32600 391 / 9e-138 hydroxyproline-rich glycoprotein family protein (.1) Lus10022607 [exp] 323 / 6e-110 AT2G32600 334 / 4e-115 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12874 [poplar] [flax] zf-met Zinc-finger of C2H2 type CL0361 [poplar] [flax] PF16835 [poplar] [flax] SF3A2 Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
Representative CDS sequence Show only first row Show all	>Potri.006G121300.1 pacid=42767145 polypeptide=Potri.006G121300.1.p locus=Potri.006G121300 ID=Potri.006G121300.1.v4.1 annot-version=v4.1 ATGGATAGAGAATGGGGTTCTAAGCCAGGCAGCGGAGGCGCCGCCTCCGCCCAGAACGAGGCAATCGACCGCCGTGAGCGTCTCAGACGTCTCGCCCTGG AGACAATCGATCTAGCAAAAGATCCCTATTTCATGCGCAACCACCTCGGCAGTTATGAGTGTAAGCTGTGTCTGACTTTGCACAACAATGAAGGAAACTA CTTGGCTCACACACAAGGGAAGCGCCATCAGACCAATTTGGCTAAGAGAGCTGCTCGTGAGGCTAAAGATGCGCCTGCCCTTCCTCAGCCTAACAAGCGC AAAGTTAACATTCGCAAGACAGTCAAAATTGGCAGGCCTGGTTACCGGGTGACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGA TTGAATATCCTGAGATAGAGGACAATACAAAGCCTAGGCATCGATTTATGTCATCTTATGAACAGAGAATTGAGGCCAATGATAAGAGGTTTCAATATCT TTTATTTGCAGCGGAACCTTATGAGATCATTTCTTTCAAGGTTCCTAGCACAGAAATTGACAAGTCTACTCCTAAATTCTTCTCACATTGGGATCCGGAC TCCAAGATGTTCACATTGCAGTTATATTTTAAATTGAAGCCACCAGAGGCGAACAAACCTCAATCTGTTGCTGCAGCCAATGGCACACTGCCTTCTCAAC CACCACCACCCCCGCCACTGCAAGGACTAGCTGCAGGATCAAGACCCCCGCCACCACCACTGCCTGCATCATTACCCCCTCCTCCTCCCATGGGTAATGG CCCTAGGCCTATGCCTCCAGGTGGAGCTCCACCTGCCCCGCCTCCACCTCCTGGTGGCAGTGGTGCAATGGCGAATTTCACACCTGGCAATCAGGTGGGT AGACCTCCAATGCTGCCTCCCCAAGGTTTTCCAGGGCAACAGATGCAGGGCCAGGTTATGCGTCCACCCCCACCACCTCCCAACATGGGACAGTAG
AA sequence Show only first row Show all	>Potri.006G121300.1 pacid=42767145 polypeptide=Potri.006G121300.1.p locus=Potri.006G121300 ID=Potri.006G121300.1.v4.1 annot-version=v4.1 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPALPQPNKR KVNIRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSYEQRIEANDKRFQYLLFAAEPYEIISFKVPSTEIDKSTPKFFSHWDPD SKMFTLQLYFKLKPPEANKPQSVAAANGTLPSQPPPPPPLQGLAAGSRPPPPPLPASLPPPPPMGNGPRPMPPGGAPPAPPPPPGGSGAMANFTPGNQVG RPPMLPPQGFPGQQMQGQVMRPPPPPPNMGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32600			hydroxyproline-rich glycoprote...		Potri.006G121300 [exp]	0	1
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	2.00	0.9202
					Potri.002G246900 [exp]	2.44	0.9118
AT1G09520			unknown protein		Potri.010G002200 [exp]	6.70	0.8898
AT1G55000			peptidoglycan-binding LysM dom...		Potri.005G032100 [exp]	7.14	0.8980
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.003G180700 [exp]	7.34	0.8795
					Potri.005G126301 [exp]	7.41	0.8938
AT3G61370			Protein of unknown function (D...		Potri.016G069200 [exp]	8.24	0.8975
AT3G22530			unknown protein		Potri.008G154100 [exp]	8.48	0.8877
					Potri.017G152460 [exp]	9.48	0.8881
AT3G22530			unknown protein		Potri.010G086400 [exp]	12.04	0.8714

Compare expression of checked genes

Potri.006G121300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.