Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03530 335 / 2e-118 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT3G09910 290 / 7e-101 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT1G43890 291 / 8e-101 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT1G02130 159 / 4e-49 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT4G35860 158 / 1e-48 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT3G09900 156 / 9e-48 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT4G17530 153 / 9e-47 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT3G11730 153 / 1e-46 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT5G59840 153 / 2e-46 Ras-related small GTP-binding family protein (.1) AT3G53610 152 / 2e-46 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097800 [exp] 356 / 1e-126 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G074400 [exp] 301 / 7e-105 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.008G032000 [exp] 295 / 2e-102 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.010G229600 [exp] 294 / 3e-102 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.005G063500 [exp] 288 / 1e-99 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.007G105500 [exp] 285 / 7e-99 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.014G049400 [exp] 159 / 3e-49 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.009G027900 [exp] 159 / 4e-49 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.002G138400 [exp] 159 / 5e-49 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021507 [exp] 335 / 3e-118 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10022608 [exp] 330 / 2e-116 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10023910 [exp] 327 / 4e-115 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10014409 [exp] 326 / 1e-114 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10029745 [exp] 299 / 4e-99 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 269 / 5e-88 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10040423 [exp] 245 / 1e-82 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10037940 [exp] 217 / 3e-71 AT5G03530 244 / 9e-82 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10038671 [exp] 215 / 2e-70 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10000595 [exp] 155 / 1e-47 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.006G121400.1 pacid=42768279 polypeptide=Potri.006G121400.1.p locus=Potri.006G121400 ID=Potri.006G121400.1.v4.1 annot-version=v4.1 ATGGGATCATCTTCAGGGCAAAGCAGTGGATCATATGATCTATCATTCAAGATCTTGTTGATCGGTGATTCTGGGGTTGGCAAAAGCAGTCTTCTTGTCA GTTTCATTTCCAGTTCCATTGAGGATATTGCACCAACCATTGGTGTGGATTTTAAGATCAAGCAGCTAACAGTAGGAGGAAAGCGATTGAAGCTGACAAT TTGGGATACAGCTGGACAGGAGAGATTCAGAACACTGACTAGTTCTTACTACAGAAATGCCCAAGGGATCATTCTTGTTTATGATGTGACAAGGAGAGAA ACCTTCACGAACTTATCAGATGTGTGGACTAAAGAAGTTGACCTTTACTCCACAAATCAGGATTGTGTCAAGATGCTTGTAGGAAATAAAGTTGATAAAG ATTCTGAAAGGGACGTAACTAGAGACGAGGGGATGTCTCTTGCTAAAGAGCATGGATGTACGTTTCTTGAATGTAGTGCTAAAACTAGACAAAATGTGGA GCAATGCTTTGAAGAGCTGGCATTGAAGATAATGGAGGTCCCTAGTCTTATGGAAGAAGGATCTACGGCAGTGAAGAGAAACATTTTAAAGCAGAAACCA GATCAGCATCCACCTTCGAGTGGTGGTGGCTGTTGCTCTTAA
AA sequence Show only first row Show all	>Potri.006G121400.1 pacid=42768279 polypeptide=Potri.006G121400.1.p locus=Potri.006G121400 ID=Potri.006G121400.1.v4.1 annot-version=v4.1 MGSSSGQSSGSYDLSFKILLIGDSGVGKSSLLVSFISSSIEDIAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE TFTNLSDVWTKEVDLYSTNQDCVKMLVGNKVDKDSERDVTRDEGMSLAKEHGCTFLECSAKTRQNVEQCFEELALKIMEVPSLMEEGSTAVKRNILKQKP DQHPPSSGGGCCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.006G121400 [exp]	0	1
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.002G023900 [exp]	2.44	0.8157
AT5G23760			Copper transport protein famil...		Potri.012G141500 [exp]	6.32	0.7379
AT1G27190			Leucine-rich repeat protein ki...		Potri.004G081700 [exp]	10.24	0.7705
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184701 [exp]	10.58	0.7922
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	10.67	0.7998
AT5G19070			SNARE associated Golgi protein...		Potri.008G202600 [exp]	22.64	0.7516
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.001G020600 [exp]	22.84	0.7882
AT2G35680			Phosphotyrosine protein phosph...		Potri.014G045500 [exp]	23.36	0.7870
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.001G304800 [exp]	23.87	0.7898	CAM2
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.018G123100 [exp]	24.24	0.7763

Compare expression of checked genes

Potri.006G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.