Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53190 647 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 502 / 1e-175 Pectin lyase-like superfamily protein (.1.2) AT3G54920 502 / 3e-175 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT5G04310 494 / 4e-172 Pectin lyase-like superfamily protein (.1) AT1G04680 489 / 2e-171 Pectin lyase-like superfamily protein (.1) AT5G63180 488 / 8e-171 Pectin lyase-like superfamily protein (.1) AT4G13210 478 / 5e-167 Pectin lyase-like superfamily protein (.1.2) AT1G67750 475 / 3e-166 Pectate lyase family protein (.1) AT3G24670 476 / 7e-166 Pectin lyase-like superfamily protein (.1) AT4G24780 474 / 7e-166 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229000 [exp] 538 / 0 AT5G04310 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G032700 [exp] 524 / 0 AT5G04310 556 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 492 / 4e-172 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 489 / 6e-172 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 488 / 9e-171 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 482 / 3e-168 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 479 / 2e-167 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 477 / 4e-167 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 477 / 5e-167 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014414 [exp] 665 / 0 AT3G53190 703 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023917 [exp] 663 / 0 AT3G53190 696 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037945 [exp] 514 / 4e-176 AT3G54920 599 / 0.0 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 498 / 2e-174 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 495 / 8e-174 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023679 [exp] 495 / 4e-173 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 490 / 2e-171 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 490 / 2e-171 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023542 [exp] 488 / 5e-170 AT5G04310 579 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 472 / 7e-165 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.006G122000.1 pacid=42767986 polypeptide=Potri.006G122000.1.p locus=Potri.006G122000 ID=Potri.006G122000.1.v4.1 annot-version=v4.1 ATGCTTACAATAAGCTGCATTGTCCTAACTCTGATTCTTAGCTCATTTTCTCCACTTGGGTCGGCAATGCTTAACCGCACCCTTCTGGTGCCACACCCCA ACCCTGAAGAAGTTGTTCAAGAAGTTCAGAGAAGAGTAAGTGCTTCCGTATCAAGAAGGCAAACGCTACAAGTACTGTCTCAAGAAGATCAATCCACATG CCTAACAGGTAACCCCATAGATGATTGCTGGAAGTGTGACCCAGACTGGCCCAACAATCGCCAGAGGCTGGCGGATTGCGCTATTGGGTTCGGGCAGTAC GCAATGGGTGGCAAGAACGGTGAATATTATATAGTGACTGACTCCTCGGATGATGATGCTGTCAATCCAAGGCCAGGCACTCTCAGATATGCTGTGATAC AACCTCAGCCCCTTTGGATTGTGTTTCCCACTAACATGCTCATTAAATTGTCCCAAGAACTCATTTTTAATAGCTATAAAACCCTTGATGGGCGTGGGGC TAATGTTCACATTTCGGGTGGTGGCTGCATTACTCTGCAGTATATAAGCAATGTTATTATTCACAACATACACATTCACCATTGTGTTCAGTCAGGTAAT ACTAATGTGCGTTCAAGCCCGACCCACTTTGGGTACCGGACCAAGTCGGATGGTGATGGCATTTCCATCTTCGGCTCCAAAGACATATGGATTGATCACT GCTCACTTTCTCATTGTAAGGACGGTCTGATTGATGCTGTGATGGGGTCCACAGGGATCACAATATCAAACAACTTTTTCTCCCATCACAATGAGGTTAT GCTGCTAGGTCACAGTGATGATTACTCGCCTGACTCCGGGATGCAGGTGACCATAGCCTTCAACCACTTTGGTGAGAAGTTGGTGCAGAGAATGCCTAGA TGTAGAAGAGGGTATATTCATGTGGTGAATAATGATTTTACACAGTGGGAAATGTACGCTATTGGTGGTAGTGGTAACCCTACCATTAACAGCCAAGGGA ATCGTTACACAGCTCCTTCCAATCGCAATGCTAAAGAGGTTACAAAGCGGGTGGACACGGCGGAAGATGATTGGAGAGGTTGGAATTGGAGATCGGAGGG AGACATATTGGTTAATGGAGCATTTTTTGTGGCCTCAGGTGCGGAACTAGAGGTGAAGTATGAGAAGGCCTACAGTGTGGAGCCCAAGTCAGCTGTTCTC ATTGACCTCCTCACCATGCACTCTGGCGTCCTCGGTGTTGGTGGCAGGAACAACAATCTGGGAATGTGGAGCACAGGGTCAAATGGCGGCAAAGAGGGAT TAGGATCCGGCGAAGGCGATGACTATTTGGATGACTACTCCGGTAGCAGTATTTCGTTGCCACCTCCCTCTCCATATGCTCTTCTTCCTATTTTGACTGC ACTGATCTACCTGTTATCTTTCCAGTACATTATAGCAGCAGCACTGACATCCATGTTGTAG
AA sequence Show only first row Show all	>Potri.006G122000.1 pacid=42767986 polypeptide=Potri.006G122000.1.p locus=Potri.006G122000 ID=Potri.006G122000.1.v4.1 annot-version=v4.1 MLTISCIVLTLILSSFSPLGSAMLNRTLLVPHPNPEEVVQEVQRRVSASVSRRQTLQVLSQEDQSTCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQY AMGGKNGEYYIVTDSSDDDAVNPRPGTLRYAVIQPQPLWIVFPTNMLIKLSQELIFNSYKTLDGRGANVHISGGGCITLQYISNVIIHNIHIHHCVQSGN TNVRSSPTHFGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYSPDSGMQVTIAFNHFGEKLVQRMPR CRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSNRNAKEVTKRVDTAEDDWRGWNWRSEGDILVNGAFFVASGAELEVKYEKAYSVEPKSAVL IDLLTMHSGVLGVGGRNNNLGMWSTGSNGGKEGLGSGEGDDYLDDYSGSSISLPPPSPYALLPILTALIYLLSFQYIIAAALTSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Potri.006G093900 [exp]	1.00	0.9603
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	1.41	0.9333
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	3.46	0.9213
AT3G17350			unknown protein		Potri.010G152900 [exp]	3.87	0.9260
AT2G25270			unknown protein		Potri.006G258700 [exp]	4.47	0.9160
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.002G124800 [exp]	5.47	0.8870
AT4G38660			Pathogenesis-related thaumatin...		Potri.004G173200 [exp]	6.92	0.8864
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	7.74	0.8962	PtrAUX6,Pt-LAX5.1
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.009G133100 [exp]	9.16	0.8807	Pt-ADF5.1
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.004G172800 [exp]	9.38	0.9014	PtrAUX5

Compare expression of checked genes

Potri.006G122000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.