Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09880 692 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 682 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 558 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G54930 555 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G21650 551 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 550 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 549 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G26030 493 / 4e-172 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G25510 484 / 4e-168 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098400 [exp] 778 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.010G054300 [exp] 580 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 576 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G180000 [exp] 573 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 565 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.002G226200 [exp] 552 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 548 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 545 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.018G034200 [exp] 486 / 5e-169 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022612 [exp] 716 / 0 AT3G09880 770 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10023920 [exp] 710 / 0 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10014417 [exp] 698 / 0 AT5G03470 759 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10021511 [exp] 684 / 0 AT3G09880 739 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10015144 [exp] 572 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 562 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 560 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10032082 [exp] 557 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 544 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10036926 [exp] 521 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01603 [poplar] [flax] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Potri.006G122300.3 pacid=42767099 polypeptide=Potri.006G122300.3.p locus=Potri.006G122300 ID=Potri.006G122300.3.v4.1 annot-version=v4.1 ATGTTGAGGAAAATCATGAAAGGAGGGCATCGGAAGCCCTCTAAATCAGACGATAATGATTTCGGGTTCGGGCCACCACCGAACTCCGGGTCTGGTCCCG CAAACAATGTGGTGGTTAACCATTCGTCCCGGGCTGCTCCTGGCCCTCCAAGCCCACGCTATGGGCCTACAGTCATTACTCCGCCGCCAATGAACACGGT GGAGCCTCTCCCTTTCTTCCGGGATGTGCCGGTTTCTGAACGTCCGAACCTGTTCTTACGGAAACTCCAGCTATGCTGCTTCCATTTTGACTTTACAGAT ACCTTAAAATCGATGCGAGAGAAGGAAATCAAGAGGCAAACTTTATTGGAGCTTGTGGATTTTATTCAATCGGGTTCGGGAAAGATTACTGAGAATTGTC AAGAGGAAATGATAAAAATGGTTTCAGTGAATATATTCCGGTGCTTGCCTCCGCATGAAAATACAGGGCAAGAACCCACTGATCCTGAAGAGGAGGAGCC TTATTTGGAACCATCTTGGCCTCATTTGCAGCTTGTTTATGAGCTTCTTTTAAGATATGTTGTGATGTCCGATACAGACACCAAGGTTGCCAAGAGGTAT GTTGATCATTCGTTTGTGTTGAAGTTGCTTGATTTGTTTGATTCTGAGGATCCGCGAGAGAGGGAGTATTTGAAGACTATTCTTCATAGGATTTATGGCA AGTTTATGGTGCATCGTCCTTTTATTAGGAAGGCTATAAATAATATTTTCTATCGGTTTATCTACGAGACTGAGAGGCACAGTGGGATTGGGGAACTGTT GGAGATTCTAGGGAGTATTATAAATGGGTTTGCGCTGCCAATGAAAGAGGAACATAAGTTGTTCCTTGTAAGGGCGCTTATACCATTGCATAAACCAAAG CAGATATCTGTGTACCACCACCAGCTGTCATATTGCATCATTCAATTTGTTGAAAAGGATTACAAGCTGGCTGATACGGTTATTAGGGGTTTCTTGAAGT ATTGGCCAGTGACTAATTGTCAAAAGGAAGTTCTCTTCCTTGGAGAACTTGAAGAAGTGCTGGAGGCAACACAGTCTGCAGAGTTTCAGCGTTGTATGGT CCCTCTTTTCAGACAGATTGCACGTTGCCTTACCAGCTCCCATTTTCAGGTTGCTGAACGAGCTCTTTTTTTGTGGAATAATGAGCACATAGTGGATTTA ATTGCCCAGAATCGAACTGTCGTATTACCAATTATATTTGAGGCGTTGGAAAAGAATATCCAGAGTCACTGGAACCAGGCAGTTCATGGACTATCTGTTA ATATTCGGAAAATGTTCTTAGACATGGATACGGAGTTATTTGAAGTGTGTCAGAGGCAGTATGCAGAGAAAGAGTCTAGGGCCAGAGATGTGGAAGAGCA GCGAGAATTGACATGGAAGAGACTGGCTGATGTGGCAGCACAGAGAGGGGGGGAGGATATGATCACTGTTTAA
AA sequence Show only first row Show all	>Potri.006G122300.3 pacid=42767099 polypeptide=Potri.006G122300.3.p locus=Potri.006G122300 ID=Potri.006G122300.3.v4.1 annot-version=v4.1 MLRKIMKGGHRKPSKSDDNDFGFGPPPNSGSGPANNVVVNHSSRAAPGPPSPRYGPTVITPPPMNTVEPLPFFRDVPVSERPNLFLRKLQLCCFHFDFTD TLKSMREKEIKRQTLLELVDFIQSGSGKITENCQEEMIKMVSVNIFRCLPPHENTGQEPTDPEEEEPYLEPSWPHLQLVYELLLRYVVMSDTDTKVAKRY VDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALIPLHKPK QISVYHHQLSYCIIQFVEKDYKLADTVIRGFLKYWPVTNCQKEVLFLGELEEVLEATQSAEFQRCMVPLFRQIARCLTSSHFQVAERALFLWNNEHIVDL IAQNRTVVLPIIFEALEKNIQSHWNQAVHGLSVNIRKMFLDMDTELFEVCQRQYAEKESRARDVEEQRELTWKRLADVAAQRGGEDMITV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.006G122300 [exp]	0	1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.014G196200 [exp]	2.82	0.8783
AT1G21370			unknown protein		Potri.002G071300 [exp]	6.00	0.8736
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.008G208000 [exp]	10.72	0.8895
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Potri.012G061000 [exp]	11.87	0.8970
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	12.20	0.9006
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Potri.004G226400 [exp]	17.32	0.8713
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.006G157000 [exp]	17.54	0.8943
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.005G100800 [exp]	25.69	0.8696
AT5G60760			P-loop containing nucleoside t...		Potri.009G009200 [exp]	25.92	0.8110
AT3G02360			6-phosphogluconate dehydrogena...		Potri.004G108880 [exp]	26.07	0.8609

Compare expression of checked genes

Potri.006G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.