Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 768 / 0 Major facilitator superfamily protein (.1) AT2G28120 716 / 0 Major facilitator superfamily protein (.1) AT1G74780 347 / 1e-112 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 325 / 5e-104 Major facilitator superfamily protein (.1) AT5G50520 315 / 4e-100 Major facilitator superfamily protein (.1) AT5G50630 315 / 4e-100 Major facilitator superfamily protein (.1) AT1G18940 314 / 5e-100 Nodulin-like / Major Facilitator Superfamily protein (.1) AT3G01930 313 / 1e-98 Major facilitator superfamily protein (.1.2) AT5G14120 311 / 4e-98 Major facilitator superfamily protein (.1) AT2G34350 305 / 1e-96 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032901 [exp] 790 / 0 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 740 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 680 / 0 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 669 / 0 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 332 / 5e-106 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 329 / 6e-105 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.015G067000 [exp] 323 / 3e-103 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.001G194500 [exp] 300 / 2e-98 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 308 / 1e-96 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014640 [exp] 777 / 0 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 770 / 0 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 754 / 0 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 754 / 0 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 743 / 0 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 647 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 602 / 0 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 347 / 2e-112 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10032034 [exp] 307 / 2e-96 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035203 [exp] 306 / 4e-96 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.006G122400.1 pacid=42769955 polypeptide=Potri.006G122400.1.p locus=Potri.006G122400 ID=Potri.006G122400.1.v4.1 annot-version=v4.1 ATGGCGGGGGCTGATTTTAGAAGTAGTGATGGTGGTGGTGGTGGTGGTGGTTGGAGAGAGATGAAGAGATTCGGCTTGCAAGTTCTTTTGGGGCGGTGGT TCATGGTCTTTGCCTCATTCTTGATCATGGCCATGTCTGGTGCCACCTACATGTTTAGTCTATACTCTACTGATATCAAGAGGTCGTTAGGCTATGACCA ATCCACGCTCAATTTGCTAAGCTTCTTCAAGGACGTGGGTGGAAATGTTGGACTCCTGCCAGGGGTCATCAATGAAGTTTCACCTCCATGGGTGATTCTA TCTGCAGGAGTGGTCATGAATTTCTTCGGTTATTTCATGATTTGGCTTGCTATTACTGGCAAAATTGCCAAGCCAAAAGTTTGGCAGATGTGTCTTTATA TTTGTATTGGGGCAAACTCACAGACATTTGCCACTACTGGAGCTTTAGTCACCTGCGTCAAGAACTTCCCAGAAAGCAGAGGAAGTGTTTTAGGCTTGTT GAAGGGGTTTGTTGGTCTAAGTGGTGCAATTATGACACAAGTTTACCATGCTTTCTATGGAGATGACTCGAAGGCTTTTATCTTGCTTATTGCCTGGCTT CCAGCTGCTGTTTCTTTCATTTTTCTTCGCACAATTCGGATCATGAAGATTGTTCGCCAAGCAAATGAGATCAAAGTTTTCTACCAACTCCTCTATATTT CGCTTGGCCTTGCCGGTTTTCTCATGATTTTGATCATCATACAGAACAAGTTCAGGTTTACCAGGATTGAGTATATCGGAGGTGCTATTGTTGTTCTTAT CCTACTTTTTCTCCCTGTAGCTGTTGCTATAAAAGAGGAATATGATATCTGGAAGAGCAAAAAGGTAGTTTTCAGTGACCCTTCTCAAGTGAAAATTGTG ACCGAAAATCCACCAGAAGTAGAATTGCCACTATCAACACAACCACCGGAATCATTACCGTCCAATGCTTCTGATCCTGCTGCAACGTCTGCAGAGAAGC AAACTTCTTGCTTTGAAAACATTTTCAAGCCACCAGAAAGGGGCGAAGACTACACCATATTGCAAGCACTTTTCAGCCTTGACATGTTGGTACTCTTTAT TGCAGCAACTTGTGGCATTGGAGGCACATTAACTGCAGTTGACAACTTGGGTCAGATTGGCCATTCACTAGGCTATCCGAGTCGTAGTATCACTACCTTT GTGTCACTTGTTAGCATATGGAACTATCTTGGTCGAGTAGTGTCTGGTTTCGCCTCAGAGATCTTGCTGAAGAAGTACAAGATCCCTCGTCCTCTATTGC TTTCGATTGTGCTTCTCTTCACTTGTGCTGGCCATATTCTAATTGCCTTCCCTTCTTCAAATTCTCTCTACTTCGCATCAGTAATCCTCGGGTTCTGCTT TGGAGCACAGTGGCCATTAATGTATGCCATCATATCTGAGATTTTTGGCCTCAAGTACTATTCCACGTTGTACAATTTTGGTGCTGTTGCTAGCCCTGTT GGTTCGTACATTCTTAATGTGGTAATTGCTGGTGACTTGTATGATAAAGAAGCATCAAAGCAAATGAAGGCCTTGGGTCTTAAAAGGAACGCAGGCGAGG ACTTGACATGCAACGGTGTGCAGTGTTACAGAATGTCTTCTATAATAATTACTGCAGCGACATTGTTTGGAAGCTTTGCTTCGTTTATTTTGACCCTAAG GACCAGAAAATTCTACAAAGGTGATATCTATAAGAAATTCAGAGATGAAGCCGAGGGTGCCGAGAATGTTACAGGTTCATCTGGAATTACAAAAGAGGAG AGAAAGTGCGAAGCCAGAGGAGGTCATCAGTAG
AA sequence Show only first row Show all	>Potri.006G122400.1 pacid=42769955 polypeptide=Potri.006G122400.1.p locus=Potri.006G122400 ID=Potri.006G122400.1.v4.1 annot-version=v4.1 MAGADFRSSDGGGGGGGWREMKRFGLQVLLGRWFMVFASFLIMAMSGATYMFSLYSTDIKRSLGYDQSTLNLLSFFKDVGGNVGLLPGVINEVSPPWVIL SAGVVMNFFGYFMIWLAITGKIAKPKVWQMCLYICIGANSQTFATTGALVTCVKNFPESRGSVLGLLKGFVGLSGAIMTQVYHAFYGDDSKAFILLIAWL PAAVSFIFLRTIRIMKIVRQANEIKVFYQLLYISLGLAGFLMILIIIQNKFRFTRIEYIGGAIVVLILLFLPVAVAIKEEYDIWKSKKVVFSDPSQVKIV TENPPEVELPLSTQPPESLPSNASDPAATSAEKQTSCFENIFKPPERGEDYTILQALFSLDMLVLFIAATCGIGGTLTAVDNLGQIGHSLGYPSRSITTF VSLVSIWNYLGRVVSGFASEILLKKYKIPRPLLLSIVLLFTCAGHILIAFPSSNSLYFASVILGFCFGAQWPLMYAIISEIFGLKYYSTLYNFGAVASPV GSYILNVVIAGDLYDKEASKQMKALGLKRNAGEDLTCNGVQCYRMSSIIITAATLFGSFASFILTLRTRKFYKGDIYKKFRDEAEGAENVTGSSGITKEE RKCEARGGHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39210			Major facilitator superfamily ...		Potri.006G122400 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041900 [exp]	7.61	0.9990
					Potri.003G010499 [exp]	8.48	0.9995
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.006G055600 [exp]	9.79	0.9988	Pt-ZOG1.15
AT1G30890			Integral membrane HRF1 family ...		Potri.001G327700 [exp]	9.79	0.9994
AT5G46940			Plant invertase/pectin methyle...		Potri.003G086500 [exp]	12.00	0.9986
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.004G000400 [exp]	13.41	0.9989
AT2G31335			unknown protein		Potri.008G162900 [exp]	14.35	0.9900
					Potri.011G112350 [exp]	15.09	0.9965
AT4G04980			unknown protein		Potri.001G317001 [exp]	16.18	0.9848
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.003G213700 [exp]	17.14	0.9994

Compare expression of checked genes

Potri.006G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.