Plant FIBer expression Database

Potri.006G122600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03460 88 / 1e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023922
[exp]
99 / 1e-28 AT5G03460 81 / 8e-22 unknown protein
Lus10014419
[exp]
65 / 1e-15 AT5G03460 59 / 1e-13 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G122600.1 pacid=42768571 polypeptide=Potri.006G122600.1.p locus=Potri.006G122600 ID=Potri.006G122600.1.v4.1 annot-version=v4.1
ATGGTTTGCGTAGCGTGCTTGTTACCTCTGTTCCTCGTCCCAATCGTCAATCTGTTACCCTTGATCTTCTATTTTCTCAAGGGAAAAATATATGCGCTGT
TTGGATGGGAATACAGGAAACCAGAGAGAGCTCCTCCAGCTTGTCCTTATAAGCCCCCTGCTTCCAGTATTAACACTACTAACAAACAGATGGAAGCGGA
AGGTGAACCTGTTGCGAAACCTGTGGCAGTAGGAGATGGAAAGCAGGAGTGA
AA sequence
>Potri.006G122600.1 pacid=42768571 polypeptide=Potri.006G122600.1.p locus=Potri.006G122600 ID=Potri.006G122600.1.v4.1 annot-version=v4.1
MVCVACLLPLFLVPIVNLLPLIFYFLKGKIYALFGWEYRKPERAPPACPYKPPASSINTTNKQMEAEGEPVAKPVAVGDGKQE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03460 unknown protein Potri.006G122600
[exp]
0 1
AT1G50740 Transmembrane proteins 14C (.1... Potri.011G138100
[exp]
2.23 0.6933
AT1G71950 Proteinase inhibitor, propepti... Potri.019G083300
[exp]
2.44 0.7776
AT5G37780 ACAM-1, TCH1, C... TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600
[exp]
3.46 0.6896 ACCAL.6
AT3G52560 MMZ4 ,UEV1D ,UE... MMS2 ZWEI HOMOLOGUE 4, ubiquit... Potri.006G205700
[exp]
3.87 0.7090
AT1G71950 Proteinase inhibitor, propepti... Potri.013G112800
[exp]
10.09 0.7211
AT1G54140 TAF9, TAFII21 TBP-ASSOCIATED FACTOR 9, TATA ... Potri.001G168300
[exp]
16.97 0.5707 Pt-TAFII21.2
AT1G13950 EIF5A, ATELF5A-... eukaryotic elongation factor 5... Potri.006G185000
[exp]
22.58 0.6416 Pt-EIF.4
AT3G29170 Eukaryotic protein of unknown ... Potri.006G053300
[exp]
23.66 0.6069
AT3G59600 NRPE8B, NRPD8B,... RNA polymerase Rpb8 (.1) Potri.013G120500
[exp]
25.47 0.6520 Pt-ATRPABC16.2
AT4G35860 ATGB2, AtRABB1b... GTP-binding 2 (.1.2) Potri.009G159600
[exp]
30.03 0.6211 Pt-ATGB2.1

Potri.006G122600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.