Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03450 474 / 3e-160 Transducin/WD40 repeat-like superfamily protein (.1) AT5G03750 59 / 9e-10 unknown protein AT3G58720 50 / 1e-06 RING/U-box superfamily protein (.1.2) AT1G51930 47 / 4e-06 RING/U-box superfamily protein (.1) AT3G07200 47 / 1e-05 RING/U-box superfamily protein (.1.2) AT5G37230 46 / 3e-05 RING/U-box superfamily protein (.1) AT5G48655 46 / 3e-05 RING/U-box superfamily protein (.1.2.3) AT5G37270 43 / 0.0003 RING/U-box superfamily protein (.1) AT2G03000 43 / 0.0005 RING/U-box superfamily protein (.1) AT5G37250 42 / 0.0006 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228000 [exp] 448 / 3e-150 AT5G03450 357 / 8e-115 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G034700 [exp] 45 / 0.0001 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.002G245500 [exp] 43 / 0.0003 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3) Potri.003G148300 [exp] 42 / 0.0005 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.016G058300 [exp] 43 / 0.0006 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.014G139400 [exp] 42 / 0.0008 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.014G191400 [exp] 41 / 0.001 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013821 [exp] 639 / 0 AT5G03450 459 / 1e-154 Transducin/WD40 repeat-like superfamily protein (.1) Lus10026534 [exp] 397 / 2e-132 AT5G03450 317 / 3e-101 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022774 [exp] 48 / 6e-06 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3) Lus10012819 [exp] 42 / 0.0005 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10001568 [exp] 42 / 0.0007 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.006G122800.4 pacid=42769946 polypeptide=Potri.006G122800.4.p locus=Potri.006G122800 ID=Potri.006G122800.4.v4.1 annot-version=v4.1 ATGGCAGAACCGTACATCACAGACGAACAAGACTACGAAGCAATGCAATTATTAGAAATAGGATTGGAACTATCCGAATCGGAATATTCCGAGGAGGATG AGGATTTCATTCCCGTTGTAGAATTGGATTCTTCTCCTAGGTTTTTGTTAAATTCTGACCAAGCAACAACAACAACAGCTGCAGCAGCAGCCGAAAATCT CAACTTTCAGGAAGAGGAAGTAGACGTGGAAGAGGAGAGAAATAAGCGAAGAAGAGTAGAGAAATTAGGAAGTGGAGGAGACATTTGTTACCGTAATGGA GGAGATGATGCTGGTGGAGAGAGCTCTCAAAATAGTCAATGGAACCGGAGTGAATTTGATGGGCTTTTTTGCCCTATTTGTATGGAAGCATGGACCAACG AAGGCGACCATCATATCTGCTGCCTTCCTTGTGGACATTTGTTTGGTCTTTCTTGCATCGAGAAATGGTTAAGGCAACGTGGAAGGTTAGCCAAGTGTCC TCAATGTAATAGAAAAGGTACATTGAGGGATATTAGGAAATTGTTTGTGCCGAGGATTGCTGTTGTTGATGAAGAATCACAGAAGAGAATTCGATTTCTT GAAGAAAAATGTGCTTCTCTGGTAAAGAAGGATGTGGATTTGTGCAAGAAAGAATCTGAATGGAAAAGGAGAGAAGCTGCATTGCAGCTTGAAGTTCAAA AGTGTAAAGAGAGGACAATTTATTTGGAGCATTTATTAGGAGATTTGCAGAGCAGGCCGTCTGGAGTTGCCACTGCCTATAGGGGCTCTCAAGGACATGA ATTTGGAAATAGCATCTACTCTGATTTCAACAGGCAGGGATCTTCAAGCTGCTTCATGTTACAGAGAGAGTTGCGGGTGGACGGTGCACGTTTATTTGAT GTTGATGCTTCTGGTAAAATTTTATTGCTTGTGCGGAGGGTACCAATGATGGGTGGATCACACGTGCTTACCAAAATGAGCTTAATTCCTCCACATGAAA GTGAAGATATTTTCCTTCCTCCTGCCACAAAAATCATAAAGGACCTGCATATATCCCCCACTAATGGAAGTCTCGCACTTTTTGCTTCCTTAGGCAAGAA ACTGTCAGTTCTAAGTATGGAGAGCAACAATGTCATCCTTTCTTATGACTTGCCGGCTGCTGCTTGGTCTTGTTCATGGGATCTTAACTGCTCACACTAT GTATATGCTGGACTACAGAATGGTTCACTTTTGGTGTTTGATATGCGTATAACTGGGAGTCCTGTAGAATCCAGATTAGGGCACACAACCGACCCAATTC ATACTGTACAGTCCCTTCAACATATCTCAACTCTTCCTTCTGGTGTCAAAACAGTGGTGTCTGCTTCCTCTGTTGGCATGTGTCAATGGAACTTTGGTGG TGAGGAAGAAAGGCCATTTTTGATACCTGAAACAACAAATCAAGGAGTATGTGTATCCCTTGCTTATTGTGCGAGCAGTGATGACATTGTTGTTTCTTAT CGTCCCAGAGTTGAAATGTCCAACGAGGTTGTTTCTCAAACTTTATTTAAGCCTTCCCTTGCTACTGGGCAAGGAGTGCTTGGTTCTCATCTTCATTTGA AGAGAGCAGGCAGCAACTATGAGAAGTTGGGTATTGCATGTTCAACTGTAAGTGGTATTAGACTGCCCAAATCTAGCATCATAGACAGACAGAATCAGAA GCCTCTATTTGCCACAGGGGACGAAGTTTCTTGTGGATTGATCTTGCAAGAGTTGCCATCTTTTACAGCTACTCAACGGCTTAAATCACACCAGCATTTT ATTTATGATGTGAAGTACACAAGCACACACAGCCAAGGTTTGCTTGGTTGTTTAAGTGAGGATACAGTACAACTTTTCAGCACCAAGCTCTCGTGA
AA sequence Show only first row Show all	>Potri.006G122800.4 pacid=42769946 polypeptide=Potri.006G122800.4.p locus=Potri.006G122800 ID=Potri.006G122800.4.v4.1 annot-version=v4.1 MAEPYITDEQDYEAMQLLEIGLELSESEYSEEDEDFIPVVELDSSPRFLLNSDQATTTTAAAAAENLNFQEEEVDVEEERNKRRRVEKLGSGGDICYRNG GDDAGGESSQNSQWNRSEFDGLFCPICMEAWTNEGDHHICCLPCGHLFGLSCIEKWLRQRGRLAKCPQCNRKGTLRDIRKLFVPRIAVVDEESQKRIRFL EEKCASLVKKDVDLCKKESEWKRREAALQLEVQKCKERTIYLEHLLGDLQSRPSGVATAYRGSQGHEFGNSIYSDFNRQGSSSCFMLQRELRVDGARLFD VDASGKILLLVRRVPMMGGSHVLTKMSLIPPHESEDIFLPPATKIIKDLHISPTNGSLALFASLGKKLSVLSMESNNVILSYDLPAAAWSCSWDLNCSHY VYAGLQNGSLLVFDMRITGSPVESRLGHTTDPIHTVQSLQHISTLPSGVKTVVSASSVGMCQWNFGGEEERPFLIPETTNQGVCVSLAYCASSDDIVVSY RPRVEMSNEVVSQTLFKPSLATGQGVLGSHLHLKRAGSNYEKLGIACSTVSGIRLPKSSIIDRQNQKPLFATGDEVSCGLILQELPSFTATQRLKSHQHF IYDVKYTSTHSQGLLGCLSEDTVQLFSTKLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03450			Transducin/WD40 repeat-like su...		Potri.006G122800 [exp]	0	1
AT4G09970			unknown protein		Potri.013G102300 [exp]	7.74	0.7568
AT5G40270			HD domain-containing metal-dep...		Potri.008G190200 [exp]	9.94	0.7767
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.001G233200 [exp]	13.74	0.7494
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.003G128500 [exp]	16.24	0.7469
AT4G32295			unknown protein		Potri.006G254700 [exp]	16.24	0.7096
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	18.89	0.7614
AT2G25920			unknown protein		Potri.002G198400 [exp]	19.33	0.7171
AT4G39870			TLD-domain containing nucleola...		Potri.005G075800 [exp]	20.85	0.7199
AT3G19340			Protein of unknown function (D...		Potri.014G144300 [exp]	21.21	0.7515
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G076700 [exp]	21.72	0.7758

Compare expression of checked genes

Potri.006G122800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.