Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-XTH32.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 478 / 5e-172 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 369 / 5e-129 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT4G14130 200 / 5e-63 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT1G14720 197 / 3e-61 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT3G23730 195 / 8e-61 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT1G32170 195 / 2e-60 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT1G10550 193 / 8e-60 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT5G57530 188 / 2e-58 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT2G01850 186 / 6e-57 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT5G57540 183 / 2e-56 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098600 [exp] 530 / 0 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G006600 [exp] 393 / 1e-138 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.011G077320 [exp] 196 / 3e-61 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.014G146100 [exp] 195 / 6e-61 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.009G163850 [exp] 194 / 2e-60 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.003G097300 [exp] 194 / 7e-60 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G159700 [exp] 192 / 9e-60 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.001G136100 [exp] 193 / 2e-59 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.014G115000 [exp] 192 / 2e-59 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001396 [exp] 459 / 2e-164 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 459 / 2e-164 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 442 / 5e-158 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 441 / 2e-157 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 395 / 4e-139 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 394 / 1e-138 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 393 / 2e-138 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 390 / 3e-137 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 373 / 2e-130 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 278 / 1e-94 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.006G122900.1 pacid=42769123 polypeptide=Potri.006G122900.1.p locus=Potri.006G122900 ID=Potri.006G122900.1.v4.1 annot-version=v4.1 ATGGCTCTCCTTACCTTGTTTATTCTCATTCTTATAGCTCCTTCCTCTAGTAATGCTCAATGGCCACCTTCACCTGGCTACTGGCCAAGTTCTAGATTCA GGTCAATGAGCTTTTACCAAGGTTACAGAAACCTTTGGGGTTATTCCCATCAAAGAGTAGACCCGAATGCGTTGACTATCTGGCTAGATAGTACATCAGG AAGTGGATTTAAATCAGTTAAACCATTTCGATCAGGGTATTTCGGTGCCTCCGTTAAGCTCCAACCTGGTTACACTGCCGGAGTCATAACAGCTTTCTAT CTATCGAACAACGAAGCTCACCCCGGGTTCCATGATGAGGTGGACATAGAATTTCTTGGGACAACATTTGGGAAGCCTTACACTTTGCAGACCAACGTTT ACATCCGAGGAAGTGGGGATGGGAGAATAATTGGGAGAGAAATGAAGTTTCATCTGTGGTTTGATCCGACCAAAAACTTCCATCATTATGCCATTCTTTG GAGTCCTAAGGAGATTATATTCCTCGTGGATGATGTGCCCATAAGGAGGTACCCGAGGAAAAGCGACGCAACCTTTCCCCTAAGGCCAATGTGGGTTTAC GGTTCAATCTGGGATGCCTCATCCTGGGCTACTGAGGAGGGAAAATACAAAGCTGACTATAGATATCAACCATTTGTTGCTAGCTACACCAATTTCAAAG CAGCTGGTTGCTCAGCCTATTCACCAGCATGGTGCCGCCCGGTCTCTGCCTCTCCATTCCGGTCCGGTGGGCTCACGAGACAACAGTACAGAACAATGCG ATGGGTTCAGAGATACCATATGGTGTACAACTACTGCAAGGACTACAAAAGAGACCATTCCCTAACGCCTGAGTGCTGGGGTTAA
AA sequence Show only first row Show all	>Potri.006G122900.1 pacid=42769123 polypeptide=Potri.006G122900.1.p locus=Potri.006G122900 ID=Potri.006G122900.1.v4.1 annot-version=v4.1 MALLTLFILILIAPSSSNAQWPPSPGYWPSSRFRSMSFYQGYRNLWGYSHQRVDPNALTIWLDSTSGSGFKSVKPFRSGYFGASVKLQPGYTAGVITAFY LSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGRIIGREMKFHLWFDPTKNFHHYAILWSPKEIIFLVDDVPIRRYPRKSDATFPLRPMWVY GSIWDASSWATEEGKYKADYRYQPFVASYTNFKAAGCSAYSPAWCRPVSASPFRSGGLTRQQYRTMRWVQRYHMVYNYCKDYKRDHSLTPECWG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Potri.006G122900 [exp]	0	1	Pt-XTH32.1
AT1G60870		MEE9	maternal effect embryo arrest ...		Potri.006G003600 [exp]	1.00	0.9080
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	2.00	0.9021
AT1G80133			unknown protein		Potri.018G130700 [exp]	5.74	0.8332
AT1G50660			unknown protein		Potri.011G003200 [exp]	6.63	0.8252
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G275700 [exp]	9.89	0.8788
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	12.16	0.8843
AT1G48405			Kinase interacting (KIP1-like)...		Potri.015G030100 [exp]	13.41	0.8906
AT3G62630			Protein of unknown function (D...		Potri.005G019600 [exp]	13.96	0.8599
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	23.36	0.8070
AT5G45480			Protein of unknown function (D...		Potri.006G013300 [exp]	25.09	0.8149

Compare expression of checked genes

Potri.006G122900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.