Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03430 795 / 0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G012100 [exp] 42 / 0.0007 AT4G04610 697 / 0.0 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013826 [exp] 746 / 0 AT5G03430 709 / 0.0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1) Lus10026539 [exp] 728 / 0 AT5G03430 683 / 0.0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1) Lus10015560 [exp] 43 / 0.0005 AT4G21990 663 / 0.0 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00994 [poplar] [flax] MoCF_biosynth Probable molybdopterin binding domain CL0039 [poplar] [flax] HUP PF01507 [poplar] [flax] PAPS_reduct Phosphoadenosine phosphosulfate reductase family
Representative CDS sequence Show only first row Show all	>Potri.006G123000.8 pacid=42768871 polypeptide=Potri.006G123000.8.p locus=Potri.006G123000 ID=Potri.006G123000.8.v4.1 annot-version=v4.1 ATGGAGATCGATAAAGCAATCAGAGAAAGTGATGATAGGAGGCTTAAAACCAAGTACAACAACGCCATTTATGTTATCAAAAGAGCTCTTGCTCTATACT CGATTGAGGAGGTTGCCTTCAGCTTCAATGGAGGAAAGGATTCAACAGTTCTACTGCACCTACTCAGGGCTGGCTATTTTTTGCATAAAATGGAGCAAAA ATGCTCTAATGGGGGTCTGACTAGTTTCCCAATTCGAACAATATATTTTGAAAGTTCTGCTGCTTTCCCCGAAATCAACTCATTTACCTATGATACTGCA TCAAGCTATGGTTTGCAACTAGATATCATTAGTTCAGATTTCAAGTCTGGCTTGGAAAAATTACTGAAGGCTAATCCAATTAGAGCTATTTTCCTTGGTG TTCGAATTGGTGATCCTACTGCGGTGGGCCAAGAACAGTTCTCCCCTAGTTCACCTGGATGGCCTCCATTTATGAGAGTGAATCCTATCTTGGATTGGTC TTACAGAGATGTTTGGGCTTTTATCCTAACCTGCAAGGTCCAGTACTGCAGTCTTTATGATCAGGGATACACTTCAATAGGGAGCATACATGACACAGTT CCAAATGCATTGTTGTCCATCAGTGACTCCTGTTGCAAAGAAAAATTCAAACCCGCATACTTGCTTTCCGATGGAAGATTAGAAAGGGCAGGGAGAGCAA AAAAGTTTTCTTCTTCCATTAATGCTGTTGGTAATGGCTCAGGGAGTGTGGATTCACATAAAAGCAGCTTGCTCGTAGCCTCAGTCATTGCTGTGGGGGA AGAGATTCTGTTCGGCACTGTTGAGGATCAACTGGGACCTTCATTGCGTAGAAAGATCCATTCCATTGGTTGGTCGGTATCACAAACTGTTGTTGTCCAG AATGATAAAGATTCTGTGGCTGAAGAGGTTGAGCGACGGAAATCTACCAACGATATGGTTTTTATATATGGAGGGGTGGGCCCATTGCACTCTGATGTTA CCTTAGCAGGTGTTGCAAAGGCTTTTGGGGTTCGTCTTGCTCCCGATGAAGAATTTGAAGAATATCTTAGGCATCTTATAAGTGATCATTGCACTGGTGA TCAAAATGAGATGGCACTGTTACCTGAAGGTATCACTGAGTTATTGCATCATGAAAAGCTGGCTGTACCTTTGATTAAGTGCCAGAATGTAATCATTTTC ACAGCAACAAATGCCACTGAATTGGACAAGGAGTGGGATTGTTTGATTGAATTAACGAGATCCTGTGGCTTTTTGCCAACGATGGTACCTTATGTGTCAA AGCATCTACAGACAAATCTTTCAGATGTTGAAACTGCCCAACCTCTGTCAAAACTCTGTCTTGAATTCCCAGATCTAAATATTGGGTGTTATCGCAAATC CAGAAAAGGGCCTCTAATAATTAGTTTTGAAGGCAAGGATCAGACACAGATTGAATCAGCTGTAGAATCACTATGCAAGTTGTTCCATCCAGGCACTTTC TCTGGGATTCACTAA
AA sequence Show only first row Show all	>Potri.006G123000.8 pacid=42768871 polypeptide=Potri.006G123000.8.p locus=Potri.006G123000 ID=Potri.006G123000.8.v4.1 annot-version=v4.1 MEIDKAIRESDDRRLKTKYNNAIYVIKRALALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKMEQKCSNGGLTSFPIRTIYFESSAAFPEINSFTYDTA SSYGLQLDIISSDFKSGLEKLLKANPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRDVWAFILTCKVQYCSLYDQGYTSIGSIHDTV PNALLSISDSCCKEKFKPAYLLSDGRLERAGRAKKFSSSINAVGNGSGSVDSHKSSLLVASVIAVGEEILFGTVEDQLGPSLRRKIHSIGWSVSQTVVVQ NDKDSVAEEVERRKSTNDMVFIYGGVGPLHSDVTLAGVAKAFGVRLAPDEEFEEYLRHLISDHCTGDQNEMALLPEGITELLHHEKLAVPLIKCQNVIIF TATNATELDKEWDCLIELTRSCGFLPTMVPYVSKHLQTNLSDVETAQPLSKLCLEFPDLNIGCYRKSRKGPLIISFEGKDQTQIESAVESLCKLFHPGTF SGIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03430			phosphoadenosine phosphosulfat...		Potri.006G123000 [exp]	0	1
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.009G139600 [exp]	4.47	0.9418
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	5.09	0.9437
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	5.29	0.9444
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096800 [exp]	5.47	0.9427
AT4G28600		NPGR2	no pollen germination related ...		Potri.002G259300 [exp]	6.48	0.9339
AT1G66920			Protein kinase superfamily pro...		Potri.017G117065 [exp]	7.21	0.9421
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.001G471200 [exp]	10.24	0.9111	UBC.6
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035901 [exp]	11.40	0.9186
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.008G122200 [exp]	12.24	0.9042
AT3G52070			unknown protein		Potri.009G059100 [exp]	12.32	0.9324

Compare expression of checked genes

Potri.006G123000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.