Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AdoMet6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36880 716 / 0 MAT3 methionine adenosyltransferase 3 (.1.2) AT3G17390 706 / 0 MAT4, SAMS3, MTO3 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) AT4G01850 684 / 0 AtSAM2, SAM-2, MAT2 S-adenosylmethionine synthetase 2 (.1.2) AT1G02500 684 / 0 METK1, AtSAM1, SAM-1, MAT1, SAM1 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099300 [exp] 709 / 0 AT3G17390 733 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.013G004100 [exp] 702 / 0 AT3G17390 737 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.010G153500 [exp] 702 / 0 AT1G02500 730 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) Potri.014G114700 [exp] 689 / 0 AT4G01850 744 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.002G189200 [exp] 686 / 0 AT4G01850 741 / 0.0 S-adenosylmethionine synthetase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013828 [exp] 730 / 0 AT2G36880 725 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10001395 [exp] 727 / 0 AT2G36880 723 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10023007 [exp] 727 / 0 AT2G36880 728 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10009985 [exp] 706 / 0 AT3G17390 735 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10038044 [exp] 705 / 0 AT3G17390 736 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10004522 [exp] 701 / 0 AT3G17390 739 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10010070 [exp] 700 / 0 AT4G01850 739 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Lus10026541 [exp] 481 / 1e-171 AT2G36880 474 / 5e-169 methionine adenosyltransferase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00438 [poplar] [flax] S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain PF02772 [poplar] [flax] S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02773 [poplar] [flax] S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G123200.3 pacid=42768136 polypeptide=Potri.006G123200.3.p locus=Potri.006G123200 ID=Potri.006G123200.3.v4.1 annot-version=v4.1 ATGATCATCAGGTCCAGTTTTAACATGGATACCTTCCTATTCACCTCTGAGTCTGTAAATGAAGGCCACCCAGACAAGCTTTGTGACCAGGTCTCGGATG CCATCCTTGATGCCTGCCTTGCGCAAGATCCTGAGAGCAAGGTTGCCTGTGAGACCTGCTCAAAGACTAACATGGTCATGGTCTTTGGTGAGATCACAAC CAAGGCTAACGTGGACTACGAGAAAATTGTCCGGGATACTTGCAGAGGCATTGGCTTCACATCAGCTGACGTTGGCCTCGATGCTGACAACTGCAAGGTC CTTGTCAACATTGAACAGCAGAGTCCTGACATAGCCCAAGGAGTTCATGGACACCTCACCAAGAAGCCTGAGGAAATTGGTGCTGGTGACCAAGGCCATA TGTTTGGCTATGCTACTGATGAAACACCTGAGCTCATGCCATTAACTCACGTCCTCGCCACCAAGCTTGGTGCCAAGCTAACTGAGGTGAGAAAGAACAA GACATGCCCATGGTTAAGGCCTGATGGGAAGACCCAGGTTACTGTTGAGTACAAGAATGAAGGTGGAGCCATGGTGCCTATCCGGGTTCACACGATTCTT ATCTCAACACAACATGATGAGAATGTCACTAATGAGCAGATTGCAGCGGACCTGAAAGAGCATGTGATTAAGCCTGTTATCCCAGTTCAATATCTTGATG ACAAGACCATCTTCCACCTCAACCCTTCTGGTCGGTTTGTTATTGGTGGGCCTCATGGAGATGCAGGACTCACTGGCCGTAAGATTATCATTGACACTTA TGGTGGATGGGGTGCTCATGGTGGAGGCGCTTTCTCAGGCAAGGACCCCACAAAGGTGGACAGAAGTGGTGCATACATTGTTAGGCAGGCTGCCAAGAGT GTGGTGGCCTCTGGTCTTGCTCGGCGCTGTATTGTGCAGGTCTCTTACGCAATTGGTGTGCCAGAACCATTGTCAGTTTTTGTGGACACTTACAAGACTG GCAAGATTCCAGACAGGGATATCTTGGAATTGATCAAGGAGAATTTCGACTTCAGGCCTGGAATGATTGCTATCAACCTCGACTTGATGAGAGGAGGCAA TTCCAGGTACCAGAAGACTGCTGCTTATGGCCATTTTGGACGTGATGACCCAGATTTCACATGGGAGACTGTCAAGCTTCTCAAGCCCAATGCCTAA
AA sequence Show only first row Show all	>Potri.006G123200.3 pacid=42768136 polypeptide=Potri.006G123200.3.p locus=Potri.006G123200 ID=Potri.006G123200.3.v4.1 annot-version=v4.1 MIIRSSFNMDTFLFTSESVNEGHPDKLCDQVSDAILDACLAQDPESKVACETCSKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFTSADVGLDADNCKV LVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNEGGAMVPIRVHTIL ISTQHDENVTNEQIAADLKEHVIKPVIPVQYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKS VVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDRDILELIKENFDFRPGMIAINLDLMRGGNSRYQKTAAYGHFGRDDPDFTWETVKLLKPNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36880		MAT3	methionine adenosyltransferase...		Potri.006G123200 [exp]	0	1	AdoMet6
AT2G47360			unknown protein		Potri.014G119900 [exp]	2.82	0.9459
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G320500 [exp]	3.00	0.9457	SAHH.1
AT1G09610			Protein of unknown function (D...		Potri.004G226800 [exp]	3.16	0.9466
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	4.47	0.9438	SHMT3
AT1G22790			unknown protein		Potri.002G064900 [exp]	5.47	0.9175
AT1G11860			Glycine cleavage T-protein fam...		Potri.004G009600 [exp]	6.32	0.9113	GDCST.2
AT1G58170			Disease resistance-responsive ...		Potri.001G009100 [exp]	6.40	0.8937
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	6.48	0.9176
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.011G096500 [exp]	7.48	0.9314
AT3G52790			peptidoglycan-binding LysM dom...		Potri.010G231000 [exp]	7.48	0.9035

Compare expression of checked genes

Potri.006G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.