Plant FIBer expression Database

Potri.006G123300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03420 279 / 1e-85 5'-AMP-activated protein kinase-related (.1)
AT1G27070 69 / 4e-12 5'-AMP-activated protein kinase-related (.1)
AT5G39790 63 / 1e-10 5'-AMP-activated protein kinase-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G125400
[exp]
67 / 5e-12 AT5G39790 291 / 1e-98 5'-AMP-activated protein kinase-related (.1)
Potri.008G194300
[exp]
68 / 8e-12 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1)
Potri.010G034600
[exp]
63 / 3e-10 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1)
Potri.009G021600
[exp]
44 / 0.0002 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023003
[exp]
93 / 8e-20 AT5G03420 180 / 4e-50 5'-AMP-activated protein kinase-related (.1)
Lus10028512
[exp]
64 / 5e-11 AT5G39790 297 / 5e-101 5'-AMP-activated protein kinase-related (.1)
Lus10036706
[exp]
61 / 3e-09 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1)
Lus10037220
[exp]
54 / 4e-07 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1)
Lus10041287
[exp]
44 / 0.0002 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2)
Lus10006516
[exp]
44 / 0.0005 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0369 GHD PF16561 AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence
>Potri.006G123300.6 pacid=42769206 polypeptide=Potri.006G123300.6.p locus=Potri.006G123300 ID=Potri.006G123300.6.v4.1 annot-version=v4.1
ATGGCAACACTCTATAAACTCCCATCCTTCGTTTCAATCTCCTACCACAAGCCCTTCTTGTACCATAAACAACAACAACTACAACAACGAGAAATAAATC
TCGCAACTTGTGCTTGTTCAATCAAGAAACCCAGGGGTAGTCGGAAGGTAAGGAACAATGTGGAGCTTTGCAATGATTTGCGTGAATTTCTATCAACTTT
TGAACTGCCAGAGGGTCATGTACCTTCAATCAAGGAGCTTCAAGATCATGGAAGGAATGACCTGGCAAACGTTGTGAGACGGAGAGGATATAAACTTATT
AGAGATCTTCTTTCAAGTTCAACTGAATCAGACAGTGATGAGCTGCCTAATATGGAGAAAAATTTAGCTAAAGGACAGGATACAATCAATCATAGTGCAG
ATATTATAGCAACAGGTACCATCACCAAGAACCATTCTGGAAATATAGATATTGAGCTGGAAAACAAATCTGGTGGACAGATTTGCATGCCTATAGAGTC
GCCAATCGATTTGTCATTGGAGAAGAAGGCCTTGTATGATGTAGAGCAGCCAGATGAAAAGTTTCAAATCATAGTCAAAGACAGATTGTTGTTGTCATCC
TTGAGTACTTTTGAACAGCAAGATGAGGAAGTTAAATGTATGGTTGAAGATAATTCCATGTCAACTTCATTATATGATGTGAAACAGCAAGGTGAAGAAG
ACTTAAGCATGGTCAAACAATTTTCCTTGTCAGCGGAAGTTTCCATTGCTGACAGCAATCTTGGTGTCTTGAATGTGTATCCAGATCTCAACTCCAATGA
AGATACTTCCATGCCTGTAGAAACTTCAGCTAATTTTTCCTTTGAGGAAAAAGTCAAATATGATTCAGTTCAGGATGAGAAGGTCGGCATTGGAGCAGAA
GAAATGTCATTGTCGAGTGGGGTTTCAGACACACAATATTATGCCAATGTGAAAAATATTTCGGGTCTCATTGATAACAATAATAGTTGCATGCCAGCCA
ATTCATCATTGGTGGAAAAGGTGGCAAAGTTCATTCAGAATGGAGATTTGGATACCATTGAAGATAATGTCTATGGCTTGTCAAATGGGAGTGGTAGTGG
AGAAAGCAAGGGATTTAGGGAACCAGAAAACATGACTGAAGATCATTCAAAGATCTCATCTGAAGAGAACTTTGAAAATGCAGTTGGTGAAAGTGATACT
GCTTCAACATTAAATGAAAATTTATCGACATCCATGCAAGTTGTGCCTTCTGTGACTGTAAGCCGTGCCCTCAGGAATGAATCGCCAGCTGAAGGTCTTG
CTGGTGCTGATGTTGATCAGGATTTGGATATAGAGACGAACAAAAAGGACAATCAGATTGAGATTAATCACCTCAAATTCATACTGCATCAGAAAGAGTT
GGAATTATCCCAGTTGAAGGAACAGATTGAGAAGGAAAAGCTTGCTTTGTCTGCTTTGCAAACCAAGGCTGAGAGAGAAATCAGCAAAGCGCAAAAACTT
ATCTCAGAAAAAGATGCTGAATTACTTGTTGCTGAAGAAAGCCTTTCAGGACTAGTGGAGGTTGAGGTCGCGTATTGTGGGAATGGTGAAATGGTGGAGG
TGGCAGGTAGTTTCAATGGCTGGCATCACCCAGTTAGACTGGATCCTCAGCCATCCTCTAGCATCAAAGATCATTTTGGATCAAGGAAATCCAGACTCTG
GTCAGCAATGCTGTGGCTTTATCCTGGGGTATATGAGATAAAATTCATTGTTGATGGCCATTGGAGGGTTGATCCTCAGATGGAATCGGTTACCAAGGGT
GGAATTTGTAACAATGTTCTCCGAGTCAACAGATGA
AA sequence
>Potri.006G123300.6 pacid=42769206 polypeptide=Potri.006G123300.6.p locus=Potri.006G123300 ID=Potri.006G123300.6.v4.1 annot-version=v4.1
MATLYKLPSFVSISYHKPFLYHKQQQLQQREINLATCACSIKKPRGSRKVRNNVELCNDLREFLSTFELPEGHVPSIKELQDHGRNDLANVVRRRGYKLI
RDLLSSSTESDSDELPNMEKNLAKGQDTINHSADIIATGTITKNHSGNIDIELENKSGGQICMPIESPIDLSLEKKALYDVEQPDEKFQIIVKDRLLLSS
LSTFEQQDEEVKCMVEDNSMSTSLYDVKQQGEEDLSMVKQFSLSAEVSIADSNLGVLNVYPDLNSNEDTSMPVETSANFSFEEKVKYDSVQDEKVGIGAE
EMSLSSGVSDTQYYANVKNISGLIDNNNSCMPANSSLVEKVAKFIQNGDLDTIEDNVYGLSNGSGSGESKGFREPENMTEDHSKISSEENFENAVGESDT
ASTLNENLSTSMQVVPSVTVSRALRNESPAEGLAGADVDQDLDIETNKKDNQIEINHLKFILHQKELELSQLKEQIEKEKLALSALQTKAEREISKAQKL
ISEKDAELLVAEESLSGLVEVEVAYCGNGEMVEVAGSFNGWHHPVRLDPQPSSSIKDHFGSRKSRLWSAMLWLYPGVYEIKFIVDGHWRVDPQMESVTKG
GICNNVLRVNR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03420 5'-AMP-activated protein kinas... Potri.006G123300
[exp]
0 1
AT5G49970 PDX3, ATPPOX HOMOLOG OF YEAST PYRIDOXINE AU... Potri.002G102600
[exp]
9.11 0.9382
AT4G13640 GARP UNE16 unfertilized embryo sac 16, Ho... Potri.006G081001
[exp]
9.59 0.9680
AT5G01030 Protein of unknown function (D... Potri.016G105500
[exp]
13.49 0.9650
AT2G32120 HSP70T-2 heat-shock protein 70T-2 (.1.2... Potri.008G152000
[exp]
14.69 0.9685
AT1G71000 Chaperone DnaJ-domain superfam... Potri.010G113400
[exp]
14.96 0.9592
AT5G66110 HIPP27 heavy metal associated isopren... Potri.005G110400
[exp]
20.12 0.9671
Potri.016G032550
[exp]
20.78 0.9663
AT5G22470 NAD+ ADP-ribosyltransferases;N... Potri.004G184100
[exp]
22.24 0.9607
AT3G08970 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1... Potri.016G120000
[exp]
22.97 0.9566
Potri.014G170000
[exp]
23.68 0.9474

Potri.006G123300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.