Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53690 163 / 8e-49 RING/U-box superfamily protein (.1) AT3G14250 147 / 1e-42 RING/U-box superfamily protein (.1) AT2G26135 115 / 6e-30 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45580 108 / 5e-27 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45540 104 / 5e-26 RING/U-box protein with C6HC-type zinc finger (.1) AT3G43750 101 / 5e-25 RING/U-box protein with C6HC-type zinc finger domain (.1) AT5G60250 103 / 9e-25 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25360 100 / 4e-24 RING/U-box superfamily protein (.1) AT5G37560 100 / 6e-24 RING/U-box superfamily protein (.1) AT3G45470 95 / 1e-23 IBR domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G120300 [exp] 464 / 9e-168 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 412 / 1e-147 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 171 / 8e-51 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 164 / 2e-49 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 149 / 2e-43 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.006G104700 [exp] 98 / 4e-23 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G117600 [exp] 97 / 8e-23 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 94 / 8e-22 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G150100 [exp] 85 / 2e-18 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000412 [exp] 139 / 6e-39 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 135 / 1e-37 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 132 / 2e-37 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10022063 [exp] 117 / 2e-31 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10038341 [exp] 107 / 3e-26 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 101 / 3e-24 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036202 [exp] 101 / 3e-24 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036127 [exp] 93 / 3e-21 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022064 [exp] 57 / 2e-10 AT3G14250 78 / 2e-18 RING/U-box superfamily protein (.1) Lus10000908 [exp] 57 / 6e-09 AT1G32340 662 / 0.0 NDR1/HIN1-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G123500.2 pacid=42766875 polypeptide=Potri.006G123500.2.p locus=Potri.006G123500 ID=Potri.006G123500.2.v4.1 annot-version=v4.1 ATGGGAAACACAACGCAAAAATCCCAGGAAACGGAAGTAGAAGAACCAGGACAGCTACAACAAGAAGAAGATTCAAACTTTACATGTGAAATTTGCATCG AACCTATGTTAGCAATCAGGAAATTCAAGAATGGTAGCCTGTGTAAACATCCTTTCTGTTTGGACTGCATAGCCAAATATATCGAAGTAAAAGTCGAAGA AACCACTGGCTGTATTGAATGCCCTGGACTGAACTGCAAACAATTATTAGACCCTCTCTCATGCAATTGCATCATCTCAAAACCGATATTTGAGAAATGG TGTGATCATCTATGTGATTCTACTGTTTTAGGGTCTGAAAGCTGCTATTGCCCATACCAAGATTGCTCAGTGTTGGTTTTGAATGAGTGTAGGGATAAGC TAACGAAAATAAAATGTCCTAACTGCAAGAAAAGCTTCTGTTTCCTATGCAAGATTCCATGGCATGCAGGATACCAGTGCAATGAGAGCAGACATCTAAG AGATAGGAATGACATTCTGGTTGGTGAACTGATTGAAGAGAAAAAGTGGACTAGATGTTATAATTGTGGTCACTCCGTTGAGCGAGTTAGTGGTTGCAGA GATATGAAATGCAAATGCGGGGTTAGGTTTTGCCATCAATGTGGAGGACCATTCCATTTCGGCCCTTGTAGCCACAGGCGCTGTGGAGCTGTTCTTTGTA ATCTATTCATTTTTGTGGTGTTATCAGCTTTATGCTACTTCTTATATTTTGAAATACATTCACGCTCCAGAAGGTAG
AA sequence Show only first row Show all	>Potri.006G123500.2 pacid=42766875 polypeptide=Potri.006G123500.2.p locus=Potri.006G123500 ID=Potri.006G123500.2.v4.1 annot-version=v4.1 MGNTTQKSQETEVEEPGQLQQEEDSNFTCEICIEPMLAIRKFKNGSLCKHPFCLDCIAKYIEVKVEETTGCIECPGLNCKQLLDPLSCNCIISKPIFEKW CDHLCDSTVLGSESCYCPYQDCSVLVLNECRDKLTKIKCPNCKKSFCFLCKIPWHAGYQCNESRHLRDRNDILVGELIEEKKWTRCYNCGHSVERVSGCR DMKCKCGVRFCHQCGGPFHFGPCSHRRCGAVLCNLFIFVVLSALCYFLYFEIHSRSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53690			RING/U-box superfamily protein...		Potri.006G123500 [exp]	0	1
					Potri.001G287500 [exp]	6.55	0.8977
AT3G11810			unknown protein		Potri.010G163300 [exp]	9.16	0.8923
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021700 [exp]	12.48	0.8709
AT5G01015			unknown protein		Potri.006G113700 [exp]	15.65	0.8673
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021200 [exp]	17.20	0.8653
AT3G60590			unknown protein		Potri.014G061000 [exp]	22.67	0.8962
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.006G166300 [exp]	24.97	0.8843
AT1G26880			Ribosomal protein L34e superfa...		Potri.012G108301 [exp]	26.60	0.8876
AT5G53660	GRF	ATGRF7	growth-regulating factor 7 (.1...		Potri.015G006200 [exp]	33.04	0.8434
AT1G22540			Major facilitator superfamily ...		Potri.019G079600 [exp]	35.49	0.8774

Compare expression of checked genes

Potri.006G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.