Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65260 424 / 1e-149 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099400 [exp] 595 / 0 AT1G65260 390 / 4e-136 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025601 [exp] 455 / 7e-162 AT1G65260 398 / 1e-139 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1) Lus10027068 [exp] 350 / 3e-120 AT1G65260 308 / 5e-104 VESICLE-INDUCING PROTEIN IN PLASTIDS 1, plastid transcriptionally active 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF04012 [poplar] [flax] PspA_IM30 PspA/IM30 family
Representative CDS sequence Show only first row Show all	>Potri.006G123600.2 pacid=42768107 polypeptide=Potri.006G123600.2.p locus=Potri.006G123600 ID=Potri.006G123600.2.v4.1 annot-version=v4.1 ATGGCCATAAAATCACAGTTAATTTCAGGATTAACCCTGCCATTGCCACACCCTCCTTCTACTTCTTCAAGCTCCAACAACAACAGCAACAGCAACAATA ATACTATTTTGAGTCTGGTGAAGAGGAGGAATCTCAAGACATCGTTTTTCAATGGTGGAGTTGAAGCTCTAAAAATTACTAGGATTAGGACCGGTCTATC CACTCGGTCCCATTGTTATGGACATGGTGGAGGTGCTCTTGGAACTCGTATGAACCTTTTTGATCGGTTTGCTAGAGTTGTGAAGTCATATGCAAATGCA ATTGTAAGTTCCTTTGAAGATCCTGAGAAAATTCTAGAGCAGACAGTACTTGAAATGAATGATGACCTAACAAAGATGCGTCAGGCCACAGCACAAGTTT TGGCTTCTCAAAAGCGTTTGGAAAATAAATATAATGCTACACAACAAGCTTCTGAAGAATGGTACCGTAAGGCACAACTTGCTCTTCAAAAGGGGGAGGA AGACCTTGCACGTGAAGCTCTTAAGAGGCGTAAAACCTATGCTGATAATGCTAATTCTTTCAAAGCACAACTTGATCAACAGAGAAGTGTTGTTGAAAAT CTCATCTCTAATACTCGGCTTTTGGAGAGCAAGATACAGGAGGCAAAATCAAAGAAAGATACTCTGAAAGCACGTGCTCAGTCTGCAAAGACTGCAACCA AAGTGAATGAAATGTTGGGAAATGTTAATACAAGTAATGCACTTTCAGCTTTTGAAAAAATGGAAGAGAAAGTATTGGCAATGGAATCAGAAGCAGAAGC TCTTGGCCAATTAACTACAAACGAGCTTGATGGAAAGTTTGCATTGCTTGAAGGCTCATCAGTTGATGACGACCTTGAGAATCTGAAGAAGGAACTTGCT GGTAGCTCAAAGAAAGGAGAACTTCCACCCGGAAGAACAGTTGTCACCAACTCAAACAATCCATTCCGAGATCCTGACATCGAGATGGAGCTCAATGAGT TGAGGCAAAAGAGAAATAACTTTTGA
AA sequence Show only first row Show all	>Potri.006G123600.2 pacid=42768107 polypeptide=Potri.006G123600.2.p locus=Potri.006G123600 ID=Potri.006G123600.2.v4.1 annot-version=v4.1 MAIKSQLISGLTLPLPHPPSTSSSSNNNSNSNNNTILSLVKRRNLKTSFFNGGVEALKITRIRTGLSTRSHCYGHGGGALGTRMNLFDRFARVVKSYANA IVSSFEDPEKILEQTVLEMNDDLTKMRQATAQVLASQKRLENKYNATQQASEEWYRKAQLALQKGEEDLAREALKRRKTYADNANSFKAQLDQQRSVVEN LISNTRLLESKIQEAKSKKDTLKARAQSAKTATKVNEMLGNVNTSNALSAFEKMEEKVLAMESEAEALGQLTTNELDGKFALLEGSSVDDDLENLKKELA GSSKKGELPPGRTVVTNSNNPFRDPDIEMELNELRQKRNNF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	0	1
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	1.73	0.9891
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.001G110200 [exp]	3.00	0.9851
AT1G69935		SHW1	short hypocotyl in white light...		Potri.008G190900 [exp]	3.00	0.9808
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.011G123700 [exp]	3.46	0.9791
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	3.46	0.9854
AT1G28140			unknown protein		Potri.001G100300 [exp]	3.46	0.9844
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	4.47	0.9807	Pt-FFC.2
AT1G51080			unknown protein		Potri.008G004800 [exp]	4.89	0.9808
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.003G123600 [exp]	5.00	0.9732
AT5G63520			unknown protein		Potri.011G010200 [exp]	5.29	0.9776

Compare expression of checked genes

Potri.006G123600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.