Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59630 579 / 0 diphthamide synthesis DPH2 family protein (.1) AT5G62030 102 / 4e-23 diphthamide synthesis DPH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G041300 [exp] 110 / 7e-26 AT5G62030 623 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020375 [exp] 624 / 0 AT3G59630 560 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10009552 [exp] 603 / 0 AT3G59630 572 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10039108 [exp] 98 / 9e-22 AT5G62030 636 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10038750 [exp] 96 / 4e-21 AT5G62030 574 / 0.0 diphthamide synthesis DPH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01866 [poplar] [flax] Diphthamide_syn Putative diphthamide synthesis protein
Representative CDS sequence Show only first row Show all	>Potri.006G123700.1 pacid=42767616 polypeptide=Potri.006G123700.1.p locus=Potri.006G123700 ID=Potri.006G123700.1.v4.1 annot-version=v4.1 ATGGATTTGATGGAAATTTACGAAATTGACCGGACAGTGGATTTCATTCACAGCAGAAACTTCACCAGAGTCGCTTTACAGTTTCCAGATGAGTTACTGA AGGATTGTACTAAAGTGGTGAGAGCTTTGAGGGAGAAAATTGCGAAACTGAAAGAACAAATTGGGGTTAGTTTGTTTGTAATGGCGGATTCAACGTATGG AAGTTGTTGTGTTGATGAAGTAGGAGCTTCGCGTATCAATGCTGATTGTGTTATTCATTACGGACACACTTGCCTTAGCCCGACATCGACCCTTCCGGCT TTCTTTGTTTTTGGAAAAGCTATGATTGATGTATCAAGTTGTGCTGCAAGTTTATCGAATTATGCCTCAAATAACAGCAAGCCCTTTCTGGTGCTTTTTG GACTGGAATATGCACATGCAATTCCATATATCAGAGAGGAACTGGTAGCAGCAGCATCCACACTATCTGGGTCCAAAACCAAGACTGTATTTCATTTTGC GGAAGTTATGTGTCCATTAATAAATCCTCCCGATTGCCATAAAGATTCTGGTGGGCTTCCCAGGTCAGTTGGTGATGGTGAGGTTAGCAATGAACTTGGT GTGGCAGCTTGTTCTAGACACACCATTGGAGGCTTGAGCTGGGAATTACCTAGTGGACAAAAAATGGAGGACTACTTGCTTTTATGGATTGGTTCGGACA ATTCAGCATTTGCAAATGTTGTACTCACATTCAATGGATGCGAAATAGTCAGATATGATGCCAATGGAAATTTCTTGGGAACAGATTTATCTCAACAGAG AAGGATTCTGAAGCGTAGATATTACCTAGTGGAGAAGGCAAAAGATGCTAACATTGTTGGGATTTTGGTGGGAACTCTCGGAGTAGCTGGTTACCTCAAT ATGATCCATCAGATGAAAGACCTGATCACTGGTGCAGGGAAAAAGGTCTATACTCTTGTCATGGGAAGGCCAAATCCTGCAAAGCTTGCCAACTTCCCTG AATGTGATGTTTTTATCTATGTCTCCTGTGCCCAAACTGCTCTACTGGATAGCAAAGACTTCTATGCTCCAGTTATTACTCCATTTGAGGCCATGCTAGC TTTCAACAGAGGAAGTGAATGGACAGGAGCATATGTGATGGAATTCAGGGATTTGATTACTTCATCTCCAGTGGAAGTGAAGAGTTACTCTGAAGAAGCA CGGTTTTCTTTTGTGCAAGGCAGATATGTTGAAGATTTTGATTTGCAAGAGAAAAAAGAAGAAGAAAATGAAGGAGTTCTAGCTTTGGCAAATGCAACAG AGAAGGCTCTAAAATTGCAGGACAGAAGTTCTAATTCTCTCACCAAGGGCACAGTGCGATCCGGGGCAGATTATTTTGCAACTCGGTCTTATCATGGTCT TGACATGCACGGTGATGATTCTATGCTGGAGCCATATCTAATTGGCAGAACTGGAAAGGCATCAGGTTACCAACATGAGAAAGGCGAGTAG
AA sequence Show only first row Show all	>Potri.006G123700.1 pacid=42767616 polypeptide=Potri.006G123700.1.p locus=Potri.006G123700 ID=Potri.006G123700.1.v4.1 annot-version=v4.1 MDLMEIYEIDRTVDFIHSRNFTRVALQFPDELLKDCTKVVRALREKIAKLKEQIGVSLFVMADSTYGSCCVDEVGASRINADCVIHYGHTCLSPTSTLPA FFVFGKAMIDVSSCAASLSNYASNNSKPFLVLFGLEYAHAIPYIREELVAAASTLSGSKTKTVFHFAEVMCPLINPPDCHKDSGGLPRSVGDGEVSNELG VAACSRHTIGGLSWELPSGQKMEDYLLLWIGSDNSAFANVVLTFNGCEIVRYDANGNFLGTDLSQQRRILKRRYYLVEKAKDANIVGILVGTLGVAGYLN MIHQMKDLITGAGKKVYTLVMGRPNPAKLANFPECDVFIYVSCAQTALLDSKDFYAPVITPFEAMLAFNRGSEWTGAYVMEFRDLITSSPVEVKSYSEEA RFSFVQGRYVEDFDLQEKKEEENEGVLALANATEKALKLQDRSSNSLTKGTVRSGADYFATRSYHGLDMHGDDSMLEPYLIGRTGKASGYQHEKGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59630			diphthamide synthesis DPH2 fam...		Potri.006G123700 [exp]	0	1
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.017G017400 [exp]	1.00	0.8790	PHB1.2
AT5G37530			NAD(P)-binding Rossmann-fold s...		Potri.004G083200 [exp]	1.41	0.8389
AT3G63090			Ubiquitin carboxyl-terminal hy...		Potri.002G220000 [exp]	7.48	0.7820
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	11.09	0.8176
AT5G62270			unknown protein		Potri.007G133900 [exp]	13.85	0.7814
AT4G32910			unknown protein		Potri.018G044300 [exp]	15.29	0.7583
AT3G30841			Cofactor-independent phosphogl...		Potri.017G109500 [exp]	16.24	0.7849
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.018G043600 [exp]	18.97	0.7533
AT1G77550			tubulin-tyrosine ligases;tubul...		Potri.006G141900 [exp]	23.23	0.7626
AT1G49170			Protein of unknown function (D...		Potri.005G056500 [exp]	24.65	0.6775

Compare expression of checked genes

Potri.006G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.