Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PGP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36910 2138 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28860 1241 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 1097 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1082 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28345 977 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 959 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G62150 948 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT3G28380 947 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 946 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT2G47000 932 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093600 [exp] 2380 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.017G081100 [exp] 1270 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 1103 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 1099 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 1071 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G139700 [exp] 1045 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.014G113500 [exp] 984 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G074000 [exp] 983 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G354900 [exp] 975 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023929 [exp] 2170 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 1788 / 0 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10030674 [exp] 1261 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1260 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 1090 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 1071 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10039458 [exp] 977 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 972 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 965 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10004571 [exp] 963 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.006G123900.1 pacid=42768954 polypeptide=Potri.006G123900.1.p locus=Potri.006G123900 ID=Potri.006G123900.1.v4.1 annot-version=v4.1 ATGTCACAAGAGTCTCTAGAGATAAAGACGATTGAACAATGGAAATGGTCAGAAATGCAAGGCCTTGAACTCGTGTCCGAGCCTCCTCCTGATCCCTCCT CTCACTCCCATCCCTTTAAAACCACACCAACTCGAACATTAAACACAAACTCCACATACCAACAGCAAGAAAGTGTAGTTGAGAGAAGAGAAATGGAAAG TACAGAGCCAAAGAAAGATGGGACTTCTAGTAACAGTGGTGGTGGAGGTAACGGAGAGAAGCCGGGTGAAGTGGCTGTAGCTGGGTTTGGAGAGCTGTTT AGATTTGCTGATGGGTTAGATTATGTGTTGATGGGAATTGGGTCAATGGGTGCATTTGTACATGGATGTTCGTTACCTCTCTTTCTCCGGTTCTTTGCCG ATCTTGTTAACTCTTTTGGTTCTAATGCCAATAACATGGATAAGATGATGCAAGAAGTTTTGAAGTACGCATTTTACTTTCTTATTGTTGGTGCTGCAAT TTGGGCATCATCATGGGCAGAAATATCATGTTGGATGTGGACTGGAGAGAGGCAATCAACAAGGATGAGGATCAAGTACCTAGAAGCGGCATTAAACCAG GACATTCAATACTTCGACACCGAAGTTCGGACATCAGACGTTGTTTTTGCCATCAACACTGATGCAGTGATGGTCCAAGATGCTATCAGTGAGAAGTTGG GTAATTTTATTCACTACATGGCAACATTTGTTTCTGGATTTGTGGTGGGTTTTACTGCTGTGTGGCAATTAGCACTGGTCACTCTGGCAGTGGTTCCACT CATAGCTGTAATTGGAGCCATCCACACCACCACATTAGCCAAGCTCTCTGGCAAAAGCCAAGAAGCTTTATCACAGGCTGGAAACATTGTAGAGCAGACG ATTGTCCAAATCCGGGTTGTTTTGGCATTTGTTGGGGAATCAAGAGCATTACAAGCCTACTCGTCAGCTTTGAAGATTTCTCAAAGGATTGGTTACAAGA GTGGATTTTCAAAGGGAATGGGATTAGGTGCAACTTACTTTGTTGTTTTCTGTTGCTATGCTCTTCTTCTCTGGTATGGAGGTTATCTTGTTAGACACCA TTATACCAATGGAGGTCTAGCCATAGCTACCATGTTTGCTGTTATGATTGGAGGATTAGGTATAGGACAAGCTATCCCTAGCATGGGTGCATTTGCCAAA GCAAAAGTTGCAGCTGCAAAAATTTTCCGAATAATCGATCATAAGCCGGCTATTGACCGAAACAGTGAATCTGGGCTGGAATTAGAATCAGTTACTGGGC TTGTAGCGCTCAAAAATATAGATTTTGCGTACCCTTCAAGGCCAGATGCTCGAATTCTGAACAATTTTTCGCTTAATGTCCCAGCTGGAAAGACCATAGC TTTGGTTGGCAGCAGTGGCTCTGGTAAAAGCACTGTAGTCTCGCTCATTGAGAGATTCTATGATCCCAACTCAGGACAAGTACTGCTAGATGGGCATGAC ATTAAGACATTAAAGCTGAGATGGCTGAGACAACAAATAGGGCTAGTTAGCCAAGAGCCTGCCTTGTTTGCAACAACCATCAAGGAAAATATACTATTGG GAAGGCCTGATGCAGATCAAGTTGAAATAGAAGAAGCTGCCAGGGTTGCAAATGCCCATTCGTTCATTATCAAGCTACCCGATGGCTTTGACACTCAGGT GGGTGAGAGAGGACTGCAGCTTTCTGGAGGACAGAAGCAGAGAGTAGCTATAGCAAGGGCTATGCTGAAAAACCCAGCAATTTTGCTCTTAGATGAGGCA ACGAGTGCTTTAGATTCCGAGTCAGAAAAGCTAGTGCAAGAAGCCCTTGACAGGTTTATGATTGGCAGGACTACTCTTGTCATTGCCCATCGGCTCTCCA CCATACGCAAGGCTGACCTTGTAGCTGTACTCCAGCAGGGTAGTGTTAGTGAAGTAGGAACACATGATGAGCTCATTGCAAAAGGAGAAAATGGTGTGTA TGCCAAGCTCATTAGAATGCAGGAGGCAGCACATGAAACAGCTCTAAACAATGCCAGAAAGAGTAGTGCAAGGCCTTCTAGTGCAAGGAACTCAGTAAGC TCACCAATAATTGCCCGTAATTCATCATATGGCCGATCACCATACTCACGCAGGCTATCTGACTTTTCTACCTCCGATTTTAGTCTCTCCCTTGATGCCC CATTCCCCAATTACCGACTCGAAAAACTTGCTTTCAAGGAGCAAGCTAGTTCCTTTTGGCGCCTTGCAAAGATGAATTCTCCTGAATGGGTCTATGCCTT GGTTGGTTCTATTGGGTCTGTTATTTGTGGTTCCCTTAGCGCCTTTTTTGCATATGTTCTCAGTGCTGTACTTAGCGTCTACTATAATCCAAACCATGAT TATATGAGCAGAGAAATTGCAAAATACTGCTATTTGCTAATCGGGCTCTCATCAGCTGCACTGATATTCAATACACTACAGCATTCCTTCTGGGATATTG TGGGAGAAAACCTTACAAAACGAGTGAGGGAGAAAATGCTGACAGCAGTGCTAAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCTAG GATTGCAGCAAGATTGGCTCTTGATGCAAACAATGTCAGATCAGCCATTGGGGACAGAATTTCAGTGATTGTACAGAATACAGCACTCATGCTAGTTGCT TGCACTGCAGGGTTTGTTTTGCAGTGGCGCCTTGCCCTTGTTCTCATTGCTGTCTTCCCTTTGGTTGTTGCAGCCACTGTTCTACAGAAAATGTTCATGA ATGGTTTCTCGGGAGACCTAGAAGCTGCCCATTCCAAGGCCACACAACTGGCAGGAGAGGCCATAGCCAATATGAGGACTGTTGCTGCCTTCAATTCTGA GGCAAAAATAGTGGGTCTTTTCTCTACCAATCTCGAAACTCCTTTACGGAGATGCTTTTGGAAGGGACAGATTGCAGGAAGTGGATTTGGGATTGCACAG TTTTCTCTTTATGCTTCTTATGCTCTGGGTCTTTGGTATGCATCCTGGCTAGTGAAGCATGGAATCTCCAATTTCTCAAACACAATCCGAGTTTTTATGG TCCTCATGGTCTCTGCCAATGGTGCAGCTGAAACATTAACCTTGGCTCCTGACTTCATTAAGGGTGGTCGAGCCATGCGCTCAGTCTTTGACCTGCTTGA CCGCAAAACTGAAATTGAACCTGATGATCCTGATGCCACCCCTGTTCCTGATCGTCTTCGTGGAGAAGTTGAGCTAAAGCATGTAGACTTTTCTTATCCC ACTCGCCCTGACATTCCAGTTTTCCGCGACCTCAATCTTCGTGCACGAGCTGGCAAAATTCTTGCCCTTGTGGGTCCTAGTGGATGTGGTAAGAGCTCTG TCATTGCTCTCATACAGAGATTCTATGAGCCATCATCTGGGCGGGTGATGATTGATGGGAAGGACATTAGGAAATACAATCTCAAGTCCCTGAGAAAGCA CATTGCAATAGTCCCCCAGGAGCCATGCCTCTTTGGTACTACCATTTATGAAAATATTGCATACGGGAATGAGTCAGCAACAGAGGCTGAAATAATTGAA GCTGCTACTTTGGCCAATGCCCATAAGTTCGTATCTGCATTACCAGATGGGTACAAAACATTTGTAGGGGAGAGGGGAGTTCAGTTATCTGGTGGACAGA AGCAGAGAATTGCCATTGCTCGAGCTTTAATAAGGAAGGCCGGGCTTATGCTACTCGATGAGGCAACAAGTGCACTAGATGCTGAGTCTGAGAGGTCTGT CCAGGAAGCCCTGGATCGTGCCTGCTCAGGAAAGACCACAATTGTTGTTGCACACCGGCTATCAACCATAAGAAATGCTCATGTCATTGCTGTAATTGAT GATGGTAAAGTAGCAGAGCAAGGATCCCACTCGCATCTATTGAAAAATTATCCTGATGGGAGCTATGCCCGCATGATACAGTTACAAAGGTTCACACATA GCGAAGTCATTGGAATGACCTCAGGTTCAAGTTCCTCAACCAGACCAAAAGATGATGATGAGAGGGAAGGCTAG
AA sequence Show only first row Show all	>Potri.006G123900.1 pacid=42768954 polypeptide=Potri.006G123900.1.p locus=Potri.006G123900 ID=Potri.006G123900.1.v4.1 annot-version=v4.1 MSQESLEIKTIEQWKWSEMQGLELVSEPPPDPSSHSHPFKTTPTRTLNTNSTYQQQESVVERREMESTEPKKDGTSSNSGGGGNGEKPGEVAVAGFGELF RFADGLDYVLMGIGSMGAFVHGCSLPLFLRFFADLVNSFGSNANNMDKMMQEVLKYAFYFLIVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALNQ DIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGAIHTTTLAKLSGKSQEALSQAGNIVEQT IVQIRVVLAFVGESRALQAYSSALKISQRIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGIGQAIPSMGAFAK AKVAAAKIFRIIDHKPAIDRNSESGLELESVTGLVALKNIDFAYPSRPDARILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGHD IKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRVAIARAMLKNPAILLLDEA TSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEVGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVS SPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDAPFPNYRLEKLAFKEQASSFWRLAKMNSPEWVYALVGSIGSVICGSLSAFFAYVLSAVLSVYYNPNHD YMSREIAKYCYLLIGLSSAALIFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVA CTAGFVLQWRLALVLIAVFPLVVAATVLQKMFMNGFSGDLEAAHSKATQLAGEAIANMRTVAAFNSEAKIVGLFSTNLETPLRRCFWKGQIAGSGFGIAQ FSLYASYALGLWYASWLVKHGISNFSNTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYP TRPDIPVFRDLNLRARAGKILALVGPSGCGKSSVIALIQRFYEPSSGRVMIDGKDIRKYNLKSLRKHIAIVPQEPCLFGTTIYENIAYGNESATEAEIIE AATLANAHKFVSALPDGYKTFVGERGVQLSGGQKQRIAIARALIRKAGLMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVID DGKVAEQGSHSHLLKNYPDGSYARMIQLQRFTHSEVIGMTSGSSSSTRPKDDDEREG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.006G123900 [exp]	0	1	Pt-PGP1.1
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	2.23	0.9007	PGP1.2
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	4.24	0.8704
AT2G25220			Protein kinase superfamily pro...		Potri.018G022300 [exp]	7.74	0.8679
AT3G13980			unknown protein		Potri.006G144700 [exp]	9.16	0.8495
AT3G59110			Protein kinase superfamily pro...		Potri.005G203300 [exp]	9.38	0.8464
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	9.64	0.8691
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	13.78	0.8295
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	17.17	0.8609
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169600 [exp]	17.49	0.8321
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	18.76	0.8332

Compare expression of checked genes

Potri.006G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.