Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03415 392 / 1e-135 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) AT5G02470 243 / 1e-78 E2F_DP DPA Transcription factor DP (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093200 [exp] 550 / 0 AT5G03415 371 / 1e-127 Transcription factor DP (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022620 [exp] 415 / 1e-145 AT5G03415 393 / 6e-137 Transcription factor DP (.1.2) Lus10014423 [exp] 412 / 5e-144 AT5G03415 404 / 1e-140 Transcription factor DP (.1.2) Lus10023926 [exp] 400 / 3e-139 AT5G03415 409 / 2e-142 Transcription factor DP (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02319 [poplar] [flax] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [poplar] [flax] PF08781 [poplar] [flax] DP Transcription factor DP
Representative CDS sequence Show only first row Show all	>Potri.006G124200.1 pacid=42768163 polypeptide=Potri.006G124200.1.p locus=Potri.006G124200 ID=Potri.006G124200.1.v4.1 annot-version=v4.1 ATGGTCGCTGGTGGGGCCCACCTGGAAGATGGAGACAGGCACCCTTCGTCGGCCTCTAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCACCA CGGGCTCCTGGGTGTCTGGCCAATCGGTGTCAACTAGCGGCAGCGTGGGGTCTCCATCCAGCAGGAGCGAGCATGCCATGGCCACTCCCGCTAGTGACAG CACTTTCTTAAGGTTGAACCATCTCGACATTCACGCCGATGATGCCGCCACTCAAGATGCCGCCGCTAATAAGAAGAAAAAGAGAGGTCAACGGGCTGTT GGAGCTGATAAGAGTGGTAGAGGACTTCGTCAATTTAGCATCAAAGTTTGTGAAAAGGTGGAATCCAAAGGAACAACTACTTACAACGAGGTAGCAGATG AACTTGTCGCAGAGTTTGCTGACCCTAGCAATAGTGTTTCTACCCCAGATCAGCAACAATATGACGAGAAAAACATACGGCGGAGGGTATATGATGCTCT GAATGTACTCATGGCATTAGATATTATATCTAAGGATAAAAAGGAAATACAGTGGAAAGGTCTTCCCCGAACTAGCCTAAGTGATATTGAAGAATTGAAG GTTGAGCGTCTTGGATTGAGAAATAGGATCGAAAAGAAAGCTGCCTATTTGCAAGAACTGGAGGAACAATTTGTAGGTCTTCAGAACCTGATACAGCGAA ATGAACAACTGTACAGCTCAGGAAATGCTCCTAGTGGTGGTGTGTCGTTGCCTTTTATTCTGGTGCAGACACGCCCTCATGCAACTGTTGAAGTGGAGAT ATCAGAAGATATGCAGCTGGTTCACTTTGATTTTAATAGCACTCCTTTCGAGCTCCATGATGATAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGA CCCCAGAGCGATGATATGGCACCCAATCCACCTGCTGATGGAGGTGAAGGTTCTAGCATGTCCAGCATGTATCAACCACAAATCCTTGCTTCCCCAAGTA CAAACACCCCAGTTAGGCATCCTACTTCGCCGCCTCTTCCTGGAATCATAAAAGCACGTGTTAAGAATGAGCATTGA
AA sequence Show only first row Show all	>Potri.006G124200.1 pacid=42768163 polypeptide=Potri.006G124200.1.p locus=Potri.006G124200 ID=Potri.006G124200.1.v4.1 annot-version=v4.1 MVAGGAHLEDGDRHPSSASRRGGGGGGGGGGATTGSWVSGQSVSTSGSVGSPSSRSEHAMATPASDSTFLRLNHLDIHADDAATQDAAANKKKKRGQRAV GADKSGRGLRQFSIKVCEKVESKGTTTYNEVADELVAEFADPSNSVSTPDQQQYDEKNIRRRVYDALNVLMALDIISKDKKEIQWKGLPRTSLSDIEELK VERLGLRNRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCER PQSDDMAPNPPADGGEGSSMSSMYQPQILASPSTNTPVRHPTSPPLPGIIKARVKNEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.006G124200 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.007G048900 [exp]	1.00	0.7924
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	4.24	0.7020
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G244700 [exp]	8.00	0.7221
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G264000 [exp]	10.72	0.7122
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	20.29	0.7444
AT1G77810			Galactosyltransferase family p...		Potri.005G171400 [exp]	28.58	0.6612
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	30.33	0.7043
AT2G46060			transmembrane protein-related ...		Potri.014G087300 [exp]	35.32	0.6940
AT1G59520		CW7	CW7 (.1.2.3)		Potri.014G013500 [exp]	38.49	0.6728	CW7.2
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	39.94	0.6615

Compare expression of checked genes

Potri.006G124200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.