Plant FIBer expression Database

Potri.006G124400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46100 636 / 0 ATHRS1 Histidyl-tRNA synthetase 1 (.1)
AT5G03406 327 / 4e-110 Class II aaRS and biotin synthetases superfamily protein (.1)
AT3G02760 110 / 3e-25 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G071400
[exp]
99 / 2e-21 AT3G02760 879 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014422
[exp]
660 / 0 AT3G46100 758 / 0.0 Histidyl-tRNA synthetase 1 (.1)
Lus10023925
[exp]
658 / 0 AT3G46100 760 / 0.0 Histidyl-tRNA synthetase 1 (.1)
Lus10030341
[exp]
107 / 3e-24 AT3G02760 972 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
Lus10041073
[exp]
107 / 3e-24 AT3G02760 973 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0040 tRNA_synt_II PF00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
CL0458 IIaaRS-ABD PF03129 HGTP_anticodon Anticodon binding domain
Representative CDS sequence
>Potri.006G124400.2 pacid=42767059 polypeptide=Potri.006G124400.2.p locus=Potri.006G124400 ID=Potri.006G124400.2.v4.1 annot-version=v4.1
ATGCCTCCATTTCCATCTTCTCTTCATATATTCCACCCGAGCCTGAACCATTACCTAAAACCTAACTTCTTTTCTCTCAGTTACTTCTCTATTTCAGCCC
CTAAATTTCCTCTCTCCAGCCAATTGATTCCGTTTAACCCTAGAACTCTCTCTTCTGTAGCAACTGCACTTTCCCCATCGGAGAATGGCAGTGGAGGCGG
AGGAGAAAGGTCGGCCGCGCTGGCTGGTCCGCCGGTACTCGAAAATTCAGTGCAGAAAATTGATGTCAATCCTCCTAAAGGTACCAGAGATTTCCCTCCA
GAAGAAATGCGCCTCCGCAGCTGGCTCTTTCACAATTTCAGAGAGGTGTCGCGACTGTTTGGGTTCGAGGAGGTTGATTATCCGGTGTTAGAATCGGAGG
CACTGTTTATAAGGAAAGCTGGAGAGGAAATCAGAGACCAGTTATATTGTTTTGAAGATCGTGGAAATCGTCGTGTTGCACTAAGGCCTGAGCTTACTCC
CTCTTTGGCAAGGCTAGTAATACAGAAAGGAAAATCGCTATCCCTCCCATTGAAATGGTTTGCCATTGGACAGTGCTGGCGATATGAGAGAATGACTAGG
GGGCGTCGTCGTGAGCACTATCAATGGAATATGGATATCATTGGCGTCCCTGAAGTCACGGCTGAAGCAGAGCTCATTTCCTCCATTGTTACATTTTTTA
AGCAAATTGGAATCTCAGCATCAGATGTGGGATTCAAGGTTAATAGTCGAAAGGTTTTGCAGGAAATATTAAGGTCCTATTCCCTATCAGAAAATTTGTT
TGCCAAGGTTTGCGTTATCATAGACAAGATCGAGAAGATTCCAATTGATGAAATTAAGAAAGAATTGAACTCTGTTGGGATGCCACAAGAGGGTGTTAAC
AAGCTACTTGAAGTCCTTTCCATAAAGTCATTGTCTGAGTTGGAAGAGATACTTGGAGGTGCAGGGGAAGCAATTGCAGATCTTAAACAGCTGTTCTCAC
TTGCTGAAAAGTTTGGTTATTCTGAGTGGATTCAGTTTGATGCATCAGTGGTCCGTGGCCTTGCCTACTACACTGGAATTGTGTTTGAGGGTTTTGATAG
AGCAGGAAAGTTGAGAGCCATTTGTGGTGGTGGGCGATATGATCGGTTACTCTCTACTTTTGGTGGTGATGACCTTCCAGCTTGTGGCTTTGGCTTTGGG
GATGCTGTAATAATTGAACTACTCAAGGAGAAGGGTATCTTACCAGAATTGATCCCCCAAGTAGAGAACATTGTGTGCGCTCTTGATCATGATCTCCAAG
GAGCAGCTGCGACAGTTGCTACCATGCTCAGAGAGAAAGGCCAAAGTGTTGATTTAGTCTTGGAAAGCAAACCTCTTAAATGGGTTTTCAAGCGGGCAGC
ACGTATAAATGCACAAAGGCTTATATTGGTGGGGAATACAGAATGGAAAAAGGGTATGGTTAGTGTAAAAATCCTCTCTTCTGGGGAACAATCTGAGATT
AAAATCGATGAGCTAGAGTGA
AA sequence
>Potri.006G124400.2 pacid=42767059 polypeptide=Potri.006G124400.2.p locus=Potri.006G124400 ID=Potri.006G124400.2.v4.1 annot-version=v4.1
MPPFPSSLHIFHPSLNHYLKPNFFSLSYFSISAPKFPLSSQLIPFNPRTLSSVATALSPSENGSGGGGERSAALAGPPVLENSVQKIDVNPPKGTRDFPP
EEMRLRSWLFHNFREVSRLFGFEEVDYPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSLSLPLKWFAIGQCWRYERMTR
GRRREHYQWNMDIIGVPEVTAEAELISSIVTFFKQIGISASDVGFKVNSRKVLQEILRSYSLSENLFAKVCVIIDKIEKIPIDEIKKELNSVGMPQEGVN
KLLEVLSIKSLSELEEILGGAGEAIADLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGDDLPACGFGFG
DAVIIELLKEKGILPELIPQVENIVCALDHDLQGAAATVATMLREKGQSVDLVLESKPLKWVFKRAARINAQRLILVGNTEWKKGMVSVKILSSGEQSEI
KIDELE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G46100 ATHRS1 Histidyl-tRNA synthetase 1 (.1... Potri.006G124400
[exp]
0 1
AT4G37040 MAP1D methionine aminopeptidase 1D (... Potri.005G137400
[exp]
5.29 0.9591 MAP1.2
AT5G27560 Domain of unknown function (DU... Potri.013G020800
[exp]
5.65 0.9518
AT5G38260 Protein kinase superfamily pro... Potri.010G120950
[exp]
6.00 0.9420
AT3G48000 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, ald... Potri.015G074100
[exp]
6.63 0.9512 Pt-ALDH1.3
AT1G08550 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EP... Potri.013G053100
[exp]
6.85 0.9595
AT3G10405 unknown protein Potri.008G034900
[exp]
10.58 0.9560
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Potri.012G080900
[exp]
12.12 0.9405 DXR.1
AT4G12830 alpha/beta-Hydrolases superfam... Potri.014G175700
[exp]
13.19 0.9525
AT5G19500 Tryptophan/tyrosine permease (... Potri.001G224950
[exp]
16.73 0.9410
AT1G60230 Radical SAM superfamily protei... Potri.010G040700
[exp]
17.32 0.9539

Potri.006G124400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.