Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65560 909 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 434 / 3e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77340 342 / 4e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 296 / 9e-88 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 295 / 6e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 286 / 2e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 285 / 4e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 285 / 7e-85 RPF2 rna processing factor 2 (.1) AT1G09900 284 / 8e-85 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 283 / 6e-84 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G236800 [exp] 323 / 5e-96 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 314 / 7e-95 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 304 / 2e-91 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G021200 [exp] 302 / 2e-91 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G105700 [exp] 308 / 4e-91 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G271200 [exp] 293 / 4e-88 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 293 / 5e-88 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 299 / 1e-86 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 292 / 4e-85 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026558 [exp] 1119 / 0 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 1110 / 0 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 512 / 9e-166 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 516 / 2e-164 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 299 / 2e-87 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 295 / 5e-86 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 281 / 2e-83 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10039056 [exp] 282 / 2e-82 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 281 / 2e-82 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010407 [exp] 283 / 1e-81 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G124900.1 pacid=42770667 polypeptide=Potri.006G124900.1.p locus=Potri.006G124900 ID=Potri.006G124900.1.v4.1 annot-version=v4.1 ATGTCCAGCGTCATGAGAAAATCATCGTTCGTTATTCCATCATCATCATCAGGTGAGTCCTCATCTCCAATCTTTCACCATCTCAAAAAACCCATCTCTT CCTCTTCCTCTCCTTCTTCTTCAATCGCTTCTCTTCCAGTAGAACCTGACCCACCTGATGATCTCTCCTCGCATCACCTTCTCTCCATCCTCTCCCATCC TAAATGGCAAAGACATCCTTCTTTCCAGAAGCTAATCCCAAATCTGTCCCCTTCCCATGTTTCCTCCCTCTTTAACAACCACCCTGATCTCAACCCCAAT ATTGCCCTCCAATTCTTCAACTCCTTACCCCTTATAAAACCCGGCTTTAAACACACTGTCAAATCCCACTCTTTTCTTTTAAAAATTTTGATTCCCAATA ATTTATTTGGTGTTGGTGAGAAAATCCGCATTTCCATGATTAAAGCTTGCGTTTCTGTCGATGATATTCGTTTTCTGTTAGATTTTTTGAGGCAAATGAA TAGAGATGACAACGATATTAAGTTTAAGTTGAGTGTTAGAAGCTATAATGAGTTGTTAATGATGTTGGCGAGGTTTTTGATGATTGATGAAATGAAGAGG GTTTATACTGAAATGTTGAATGATATGATCGTGCCCAATATTTATACATTGAATACGATGGTTAATGCGTATTCCAAGATGGGTAATATAGTAGAGGCTA ATTTGTATGTGAGTAAGATTTTCCAGGCGGGTCTGAGCCCAGATAGTTTTACTTATACTTCGTTGATACTGGGGTATTGTAGGAATAATGATGTAAACAG TGCATATAAGGTTTTTAATATGATGCCCAATAAGGGCTGCCGAAGAAATGAGGTTTCATATACCACTATTATTCATGGCCTTTGCGAGGCTGGAAGGATT GATGAGGGTATTAGTTTGTTTAAGAAGATGAGGGAGGATGATTGCTATCCCACTGTACGTACGTATACAGTGATTATTCATGCATTATTTGGAAATGATA GGAATTTGGAAGGGATGGATTTGTTTAATGAAATGAGGGAGAGAAGTTGTGAGCCTAATGTTCATACTTATACTGTGATGGTTGATGCTATGTGTAAAGA AAGAAAGCTTGATGAGAGCAGAAGAATTCTAAATGAGATGATGGAGAAAGGGTTGGTTCCTAGTGTGGTTACCTATAATGCATTGATTAGAGGGTACTGC GAGGAGGGGAGGATAGAGGCTGCACTGGAAATCTTGGGTTTGATGGAATCAAATAATTGTAGGCCAAATGAACGTACATACAATGAGCTGATATGTGGGT TTAGTAAAAGGAAACATGTCCACAAGGCAATGACGTTACTCAGTAAGATGCTTGAGAGTAAGCTAACACCGAGCCTGGTTACATATAATTCATTAATTCA TGTGCAGTGTAAAGCAGGTCATTTTGATAGTGCTTATAAATTGCTAGATTTGTTAAAGGAAAACGGTTTGGTTCCTGACCAGTGGACTTATAGTGTTTTT ATAGACACCCTTTGTAAATCAAAAAGGATGGAAGAAGCTTGTGATTTGTTCAATTCACTCAAGGAGAAAGGCATAAAGGCAAATGAGGTCATGTACACTG CATTGATTGATGGACATTGCAAAGCTGGGAAAATAGATGAAGCCATTTCTTTGCTAGAGAGAATGCACAGTGAGGACTGCTTGCCAAACTCATCCACCTA TAATTCCCTGATATATGGGGTTTGCAAAGAGGGAAAAGTCCAAGAAGGACTGTCAATGGTTGAAAATATGTCAAAGATGGGAGTGAAACCCACAGTTGCT ACTTATACCATTCTGATCGAAGAAATGTTGAGAGAAGGTGATTTTGATCATGCTAATAGGGTTTTCAACCAAATGGTTTCCTTTGGACATAAGCCTGATG TATATACTTACACTGCATTTATTCATACATACTGTACCTCAGGGAACGTAAAAGAGGCAGAGGGCATGATGGCCAGGATGATTGAAGCAGGAGTTATGCC TGACTCATTGACTTATACATTGTTAATCAGCGCATATGAACGTTTGGGATTGGCATATGATGCATTCAATGTTCTCAAGCGCATGTTGGATGCTGGTTGC GATCCGTCCCACCGTACGTATTCTTTTTTAATCAGGCATCTGTCGAAGAAAAAACTGATGAAAGAAAACAGCCATTTGGAACAACTTGATCTGGTACAAA GCGTCACCTTTTTTAATGCTGCTGATGTGTGGAAGATAATGCAATTGGAAACGGCTCTAGAGCTTTTTGAGAAAATGATGGAGCATGGTTGTACTCCTGG TGTCAATACTTATGCTAAGCTCATCATAGGAGTTTGCAAAGTGGGGCGCTGGGGAGTGGCCAACAGTTTATTCAACCATATGATTGAAAGAGGATTGGTT CCTAATGAAGATATTTATAATGCACTTCTCAGTTGTTGTTGTGAACTGAGAATGCTTTCATCTGCTGCGAGACTAGTGGAGGCCATGATGGAACATGGTC ATTTACCACTTTTAGAGTCTTGCAAGCTGCTTCTATGCGGCCTATATGATGAAGGGGAAAATGAGAAGGCGAAAGCAGTTTTTGTTCATTTGCTTCTCTG TGGGTATAATTATGATGAAGTAGCTTGGAAGATTCTCATTGATGGCCTGCTCAAGAGTGGTCTTGCTGATAGATGTTCTGAACTACTGTCTGTCATGGAA AAAAGGGGTTGTCAAATTGATCCCCTAACATATACGAAGCTAATTGAGGGACTTGATGGGAGTCATGGGACATAA
AA sequence Show only first row Show all	>Potri.006G124900.1 pacid=42770667 polypeptide=Potri.006G124900.1.p locus=Potri.006G124900 ID=Potri.006G124900.1.v4.1 annot-version=v4.1 MSSVMRKSSFVIPSSSSGESSSPIFHHLKKPISSSSSPSSSIASLPVEPDPPDDLSSHHLLSILSHPKWQRHPSFQKLIPNLSPSHVSSLFNNHPDLNPN IALQFFNSLPLIKPGFKHTVKSHSFLLKILIPNNLFGVGEKIRISMIKACVSVDDIRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKR VYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRI DEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYC EEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVF IDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVA TYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGC DPSHRTYSFLIRHLSKKKLMKENSHLEQLDLVQSVTFFNAADVWKIMQLETALELFEKMMEHGCTPGVNTYAKLIIGVCKVGRWGVANSLFNHMIERGLV PNEDIYNALLSCCCELRMLSSAARLVEAMMEHGHLPLLESCKLLLCGLYDEGENEKAKAVFVHLLLCGYNYDEVAWKILIDGLLKSGLADRCSELLSVME KRGCQIDPLTYTKLIEGLDGSHGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65560			Pentatricopeptide repeat (PPR)...		Potri.006G124900 [exp]	0	1
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	2.64	0.9101
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	3.00	0.9019
AT1G05910			cell division cycle protein 48...		Potri.017G030900 [exp]	4.47	0.8735	BRD911
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	4.69	0.9072	Pt-CRP.3
AT1G18950			DDT domain superfamily (.1)		Potri.015G067300 [exp]	6.08	0.8329
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	7.74	0.8824	MOM.2,1
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	7.93	0.8776
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	8.94	0.8909
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.007G033000 [exp]	9.59	0.8008
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	10.58	0.8772

Compare expression of checked genes

Potri.006G124900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.