Plant FIBer expression Database

Potri.006G125200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34340 198 / 1e-60 TAF8 TBP-associated factor 8 (.1)
AT3G02160 164 / 3e-47 Bromodomain transcription factor (.1)
AT5G15570 150 / 4e-42 Bromodomain transcription factor (.1)
AT1G31240 95 / 4e-22 Bromodomain transcription factor (.1)
AT5G65540 45 / 7e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G092000
[exp]
504 / 2e-180 AT4G34340 246 / 6e-79 TBP-associated factor 8 (.1)
Potri.017G094900
[exp]
245 / 3e-78 AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1)
Potri.004G116200
[exp]
238 / 1e-75 AT5G15570 237 / 8e-75 Bromodomain transcription factor (.1)
Potri.015G118200
[exp]
120 / 1e-31 AT1G31240 137 / 4e-39 Bromodomain transcription factor (.1)
Potri.012G119500
[exp]
115 / 5e-30 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013818
[exp]
356 / 8e-122 AT4G34340 272 / 3e-89 TBP-associated factor 8 (.1)
Lus10026530
[exp]
348 / 8e-119 AT4G34340 270 / 2e-88 TBP-associated factor 8 (.1)
Lus10040612
[exp]
105 / 4e-26 AT1G31240 122 / 1e-33 Bromodomain transcription factor (.1)
Lus10018295
[exp]
104 / 5e-26 AT1G31240 126 / 6e-35 Bromodomain transcription factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF07524 Bromo_TP Bromodomain associated
CL0012 PF10406 TAF8_C Transcription factor TFIID complex subunit 8 C-term
Representative CDS sequence
>Potri.006G125200.1 pacid=42766908 polypeptide=Potri.006G125200.1.p locus=Potri.006G125200 ID=Potri.006G125200.1.v4.1 annot-version=v4.1
ATGAGCAATGGAGGTGAAGACAATACACCGGGAAGACCCAAATCCGATGACTTTGGTCGTGCTGTTTCAAGAATGGCAGTGGCTCAGATATGTGAGAGTG
TGGGCTTTCATGGGTTTAAGGAATCTGCTTTGGATTCTCTCAATGATATCACAATCCGATACCTCTGTGACCTAGGCAAGATCGCAAGCTTCTATGCCAA
TTTATCAGGTAGAACCCAATGTAATTTCTTTGATATAGTTAGAAGTTTTGAAGATATAGTAGGAGCTTCACAAGGGTTTTTAGGTGCGTCCATTTCTGGT
AATTGTCTTGTTAATTCTGGTACGATTAAAGAAATTATTGACTTTGTTGGTTCTAATGATGAGATTCCGTTTGCGCAACCGGTGCCAAGGTTTCCTGTTA
TTAGGGTTAGAAAGTTAATTCCTAGTTTTGAAAGTATGAGTGAAGCGCCACCTGGGAAGCATATTCCGGCATGGTTGCCTGCTTTGCCTGATCCTCACAC
GTATTTGCATACACCTATGTGGAATGAGAGGGCTGTGGATCCCCGTGCAGAAAAGATTGAGCAAGCTAGGCAGAGGAGAAAGGCAGAAAGGGCTTTGTTG
AGTTTGCAGCAGAGGTTGTTGAGTAATGGCTCAGCAGGGGCTTCATCCTTGGGGGTCAGTAATAATGTGAAAGAATTGGGAGTAGTTGAGAGTAATCAAT
TTCTTGCCACTCCGTTGGAGTCTGGGAAGAAGGATGTCTCTCCAGTTGTGTTGCCAGATAAGCTAAAAAACCATGTTTCTGTGATGGAGGCATTTGCACC
TGTCATTGAAGCAGCAAAAGAAGGCGGGATTTGTGATGATGTAGATGTTGAGAGGAAGAGTCTTCCTGAAAAGAGGCTTGCTGTGGCTTTTAAGTTTAAG
ACTGGGAAGAAGTTGTTAGGAGAGTCTTTGGACCTGAGTCTTTTGAAGAAGGGTGAGGGGAGAACGGGGCATTGGTTAGGGCGTGATGATGAGAGGGATG
ACAAGAAGAGGAGAGCAGAGTATATACTTAGGCAGTCAATGGAAAACCCACAAGAGCTTACACAGTTGTAA
AA sequence
>Potri.006G125200.1 pacid=42766908 polypeptide=Potri.006G125200.1.p locus=Potri.006G125200 ID=Potri.006G125200.1.v4.1 annot-version=v4.1
MSNGGEDNTPGRPKSDDFGRAVSRMAVAQICESVGFHGFKESALDSLNDITIRYLCDLGKIASFYANLSGRTQCNFFDIVRSFEDIVGASQGFLGASISG
NCLVNSGTIKEIIDFVGSNDEIPFAQPVPRFPVIRVRKLIPSFESMSEAPPGKHIPAWLPALPDPHTYLHTPMWNERAVDPRAEKIEQARQRRKAERALL
SLQQRLLSNGSAGASSLGVSNNVKELGVVESNQFLATPLESGKKDVSPVVLPDKLKNHVSVMEAFAPVIEAAKEGGICDDVDVERKSLPEKRLAVAFKFK
TGKKLLGESLDLSLLKKGEGRTGHWLGRDDERDDKKRRAEYILRQSMENPQELTQL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34340 TAF8 TBP-associated factor 8 (.1) Potri.006G125200
[exp]
0 1
AT1G01500 Erythronate-4-phosphate dehydr... Potri.014G089600
[exp]
1.73 0.8384
AT5G47430 DWNN domain, a CCHC-type zinc ... Potri.001G156000
[exp]
4.47 0.8302
AT2G35230 IKU1 HAIKU1, VQ motif-containing pr... Potri.001G142400
[exp]
10.48 0.8412
AT4G02720 unknown protein Potri.002G051500
[exp]
11.18 0.8415
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.008G109200
[exp]
14.07 0.8292
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.017G017800
[exp]
14.45 0.8186
AT1G51940 protein kinase family protein ... Potri.008G187500
[exp]
15.19 0.8264
Potri.019G014392
[exp]
18.65 0.8324
AT1G54150 E3 Ubiquitin ligase family pro... Potri.003G065500
[exp]
20.14 0.8148
AT2G40950 bZIP BZIP17 Basic-leucine zipper (bZIP) tr... Potri.006G034500
[exp]
20.97 0.7958

Potri.006G125200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.