Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CDC48.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03340 1496 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 1485 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 1481 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 442 / 2e-143 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 405 / 1e-131 CDC48B cell division cycle 48B (.1) AT1G03000 262 / 7e-75 PEX6 peroxin 6 (.1) AT3G56690 256 / 3e-72 CIP111 Cam interacting protein 111 (.1) AT5G08470 239 / 3e-66 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G05910 233 / 6e-64 cell division cycle protein 48-related / CDC48-related (.1) AT2G20140 214 / 1e-61 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091600 [exp] 1571 / 0 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 1479 / 0 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 1468 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 1331 / 0 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 449 / 8e-146 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 417 / 7e-136 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 261 / 2e-74 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.006G035000 [exp] 251 / 3e-70 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.001G174100 [exp] 250 / 6e-70 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021442 [exp] 1488 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 1477 / 0 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 1474 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 1469 / 0 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 1451 / 0 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 1393 / 0 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 774 / 0 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10039722 [exp] 431 / 4e-139 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10018033 [exp] 422 / 9e-138 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10020255 [exp] 432 / 1e-136 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [poplar] [flax] AcetylDC-like PF02359 [poplar] [flax] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [poplar] [flax] Cdc48_2-like PF02933 [poplar] [flax] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.006G125500.1 pacid=42769174 polypeptide=Potri.006G125500.1.p locus=Potri.006G125500 ID=Potri.006G125500.1.v4.1 annot-version=v4.1 ATGTCTAACCAAGCTGAAGCTGAATCCTCCGACTCTAAGGGAACAAAGAGGGATTTTAGTACTGCGATTCTGGAGAGAAAGAAGGCTCCGAATCGGCTTG TTGTTGATGAGGCTGTAAACGATGATAACTCTGTCGTTTCGCTTCATCCCGAGACCATGGAGAAGCTCCAGCTCTTTCGGGGTGACACCATCTTAATCAA GGGAAAGAAAAGGAAAGATACTATTTGTATTGCCCTCGCTGATGACTCATGCGATGAACCAAAGATCAGGATGAACAAGGTTGTGAGGTCGAACCTGAGG GTTAGGCTTGGAGATGTGGTGTCTGTGCACCAGTGTCCTGATGTCAAGTATGGAAAACGTGTGCACATCCTGCCCATAGATGACACAATTGAAGGGGTCA CTGGAAATCTCTTTGATGCCTACTTGAAGCCTTATTTCCTGGAGGCATATCGCCCAGTGAGGAAGGGTGATCTCTTCCTTGTAAGAGGGGGAATGAGAAG TGTGGAGTTCAAAGTTATTGAAACTGATCCACCGGAGTACTGTGTGGTTGCTCCAGACACTGAGATCTTCTGTGAGGGAGAGCCTGTGTTAAGGGAGGAT GAGAATAGATTAGATGAAGTTGGTTATGATGATGTTGGTGGTGTTAGAAAACAAATGGCTCAGATTCGGGAGTTAGTGGAGCTTCCATTGAGACACCCAC AACTATTCAAATCAATTGGTGTGAAACCACCGAAAGGTATTCTGCTGTATGGACCTCCTGGTTCTGGGAAGACTCTTATTGCCCGAGCAGTTGCTAATGA AACTGGTGCTTTCTTCTTCTGTATTAATGGACCTGAAATCATGTCAAAATTGGCTGGAGAGAGTGAGAGCAATCTCAGAAAAGCGTTTGAGGAAGCAGAG AAGAATGCACCTTCGATTATATTTATCGATGAAATTGATTCGATTGCTCCAAAGCGAGAGAAGACAAACGGAGAGGTTGAGAGGAGGATTGTATCCCAGC TCTTGACACTCATGGATGGACTAAAATCCCGGGCACATGTTATTGTCATGGGGGCTACAAATCGACCCAATAGCATTGACCCTGCTCTGAGGAGGTTTGG GAGATTCGATAGGGAAATCGATATCGGTGTTCCAGATGAAGTTGGGCGCCTTGAGGTTCTTCGTATTCATACTAAGAACATGAGGCTTGCTGAAGATGTT GATTTGGAAAGAATTGCCAAGGATACCCATGGTTATGTTGGTGCTGATTTAGCAGCACTTTGCACTGAGGCTGCACTTCAATGCATCAGAGAAAAGATGG ATGTGATTGATTTGGAAGATGAGACAATAGATGCTGAGATACTCAACTCCATGGCAGTGACTGACGAACACTTCAAGACTGCTCTTGGAACAAGCAACCC ATCTGCTTTGCGTGAAACAGTTGTCGAAGTTCCTAATGTTAGTTGGGAAGATATTGGTGGTCTCGAGACTGTTAAGAGAGAGCTGCAGGAGACTGTTCAA TATCCAGTGGAGCACCCAGAGAAATTTGAGAAGTTTGGAATGTCACCATCAAAGGGAGTTCTGTTCTACGGTCCTCCTGGATGTGGGAAAACTCTTCTGG CTAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTATCAAGGGTCCTGAATTGCTTACAATGTGGTTTGGTGAGAGTGAGGCCAATGTACGAGA AATTTTTGACAAAGCTCGCCAATCTGCTCCTTGTGTCTTGTTCTTTGATGAACTTGACTCAATTGCAACTCAGAGAGGAAGCAGTGTGGGAGATGCGGGG GGTGCTGCTGATAGAGTTTTGAACCAGCTTCTGACAGAGATGGATGGCATGTCTGCAAAGAAAACTGTTTTCATAATTGGGGCAACTAACAGACCTGACA TCATAGACCCTGCCTTATTGCGTCCAGGGCGTCTTGATCAGTTAATCTATATCCCTCTTCCTGACGAGGAGTCTCGCTTTCAAATTTTCAAATCTTGCTT GAGGAAATCACCAGTCTCTAAAGATGTTGACCTCACAGCACTTGCCAAGTATACACAGGGTTTCAGTGGTGCTGATATTACAGAAATATGCCAGCGTGCC TGCAAATATGCCATAAGAGAGAACATTGAGAAAGATATCGAGAGGGAGAGGAGGCGAAGCGAGAACCCTGAGGCTATGGAGGAAGATGTTGAGGATGAGG TGTCTGAGATCAAGGCATCACATTTTGAGGAATCCATGAAATATGCCCGTCGGAGTGTTAGTGATGCTGACATCCGCAAGTATCAGGCGTTTGCTCAAAC ACTGCAACAGTCAAGAGGGTTTGGATCTGAATTCAGGTTTGCTGAAGCTAGCGCCGGGGCAACTGGATCCGATCCGTTTGCAGCTTCTGCTGGCGGGGCT GATGAAGATGACCTTTATAGCTAA
AA sequence Show only first row Show all	>Potri.006G125500.1 pacid=42769174 polypeptide=Potri.006G125500.1.p locus=Potri.006G125500 ID=Potri.006G125500.1.v4.1 annot-version=v4.1 MSNQAEAESSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVSLHPETMEKLQLFRGDTILIKGKKRKDTICIALADDSCDEPKIRMNKVVRSNLR VRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVLRED ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMRLAEDV DLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVSWEDIGGLETVKRELQETVQ YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAG GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQIFKSCLRKSPVSKDVDLTALAKYTQGFSGADITEICQRA CKYAIRENIEKDIERERRRSENPEAMEEDVEDEVSEIKASHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAEASAGATGSDPFAASAGGA DEDDLYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	0	1	CDC48.3
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	1.00	0.8024	EMB78.2
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	2.00	0.7510
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	2.23	0.6910
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Potri.008G067900 [exp]	3.46	0.7399	Pt-ATH9.2
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Potri.014G047300 [exp]	4.24	0.6715
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.019G066200 [exp]	19.18	0.6053
AT3G11397		PRA1.A3	prenylated RAB acceptor 1.A3 (...		Potri.008G060400 [exp]	20.00	0.6402
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.008G046100 [exp]	24.41	0.6928
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.008G030700 [exp]	25.69	0.5873
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075800 [exp]	25.82	0.5904	ATUBA1.3

Compare expression of checked genes

Potri.006G125500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.