Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03330 329 / 9e-112 Cysteine proteinases superfamily protein (.1.2) AT5G04250 276 / 3e-91 Cysteine proteinases superfamily protein (.1.2) AT3G02070 238 / 6e-78 Cysteine proteinases superfamily protein (.1) AT3G22260 213 / 8e-68 Cysteine proteinases superfamily protein (.1.2.3) AT2G39320 97 / 5e-24 Cysteine proteinases superfamily protein (.1) AT5G67170 62 / 2e-10 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 52 / 4e-07 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G094700 [exp] 608 / 0 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 313 / 4e-105 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 302 / 9e-101 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.016G019700 [exp] 238 / 1e-77 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G021700 [exp] 235 / 1e-76 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 234 / 3e-76 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.008G036900 [exp] 222 / 3e-72 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.005G140500 [exp] 62 / 1e-10 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.004G196800 [exp] 51 / 8e-07 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001404 [exp] 393 / 1e-136 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 381 / 6e-132 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10026525 [exp] 355 / 1e-121 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 348 / 3e-119 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10038708 [exp] 285 / 4e-94 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 282 / 5e-93 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 271 / 3e-89 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10010459 [exp] 223 / 1e-71 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10027312 [exp] 210 / 5e-66 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10003816 [exp] 190 / 4e-59 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02338 [poplar] [flax] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Potri.006G125900.1 pacid=42770470 polypeptide=Potri.006G125900.1.p locus=Potri.006G125900 ID=Potri.006G125900.1.v4.1 annot-version=v4.1 ATGGTTATTTACGAGCAAGAGTCGGATGTTATTCAATGGGGTCTTCGTCTTCTTGATGGGGACCCACCCTTTTATTCTGGGTACTATGGTGAAGCAATAG TACAGAGTGATGATGGATACCATGGACATTATGTGAGGGATCATTATGATATTACGGACTGTAGCCATGTAGAGAATGATGAGATGATTGCACGCACGTT GCAAGAAGAGTTTTCGCAGCTTGCAGTTACTGAAGAAAATGGGTATTCACATGGTGGAGAAGAGCTTTCAGTTACTGAAGAAAATGTGTATTCACATGGT GGAGAAGAGCATTTGCAGACTTCTGTTGATGAGCATGATTGGCATTGTACACCGATGAGGAACTACCGTTCAGACAATGAGTGTAGTCATGAAGAATCAG ATGATGCAGTACCCTCTAGTTCATGCTCAAGTCCTGCTAATGGAGAAGAGTATTCCTATTCACCAGAGTTTACTGATGAAGATGGCCTGGATGATGAAGT AGGCAAGAGGTTGAATCAGTTGATTCCAATCCGTCATGTTCCAAGAATTAATGGAGAAATACCTTCAATTGATGAAGCAACATCAGATCATGAAAGGCTT CTGAACAGACTGCAGTTATTTGGCTTTGAAGAGCTCAAGGTTCCAGGGGATGGAAACTGTCAGTTCCGTGCTTTATCAGATCAAATATATAATACACCTG ATCGCCACAAAATAGTAAGACGACAGGTTGTGTATCAGCTTAAATCTCACCCAGAGATATACGAGGGATATGTTCCCATGGAGTATGGTGACTATTTGAG GAAGATGTCGAAGAGTGGTGAGTGGGGTGATCATGTGACATTGCAGGCAGTTGCGGATGCGTATGGCGTGAAAATACTCGTCATGACTTCTTTCAAGGAC ACATGTTACATAGAGATTCTTCCTGTCAGCCAAAAGCCAAAAGGAGTCATTTTCTTGAGCTTTTGGGCAGAGGTACACTACAACTCCATCTATTTTCAAG GAGATACATCTAGTGAATTCAGAAAGAAGAAAAGGTGGTGGAATTTCGGGAATAAGAACTAG
AA sequence Show only first row Show all	>Potri.006G125900.1 pacid=42770470 polypeptide=Potri.006G125900.1.p locus=Potri.006G125900 ID=Potri.006G125900.1.v4.1 annot-version=v4.1 MVIYEQESDVIQWGLRLLDGDPPFYSGYYGEAIVQSDDGYHGHYVRDHYDITDCSHVENDEMIARTLQEEFSQLAVTEENGYSHGGEELSVTEENVYSHG GEEHLQTSVDEHDWHCTPMRNYRSDNECSHEESDDAVPSSSCSSPANGEEYSYSPEFTDEDGLDDEVGKRLNQLIPIRHVPRINGEIPSIDEATSDHERL LNRLQLFGFEELKVPGDGNCQFRALSDQIYNTPDRHKIVRRQVVYQLKSHPEIYEGYVPMEYGDYLRKMSKSGEWGDHVTLQAVADAYGVKILVMTSFKD TCYIEILPVSQKPKGVIFLSFWAEVHYNSIYFQGDTSSEFRKKKRWWNFGNKN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03330			Cysteine proteinases superfami...		Potri.006G125900 [exp]	0	1
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Potri.005G121200 [exp]	11.40	0.7755
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	16.40	0.7877
AT5G04460			RING/U-box superfamily protein...		Potri.010G231100 [exp]	19.49	0.7276
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013800 [exp]	27.56	0.7480
					Potri.001G375600 [exp]	28.24	0.7107
AT2G46550			unknown protein		Potri.014G100300 [exp]	36.87	0.7321
					Potri.003G038525 [exp]	42.53	0.7543
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.015G034500 [exp]	46.58	0.7123
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	52.76	0.6810
AT1G20670			DNA-binding bromodomain-contai...		Potri.002G009100 [exp]	54.79	0.6886	BRD901

Compare expression of checked genes

Potri.006G125900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.