Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09830 587 / 0 Protein kinase superfamily protein (.1.2) AT5G03320 560 / 0 Protein kinase superfamily protein (.1) AT2G39110 470 / 3e-164 Protein kinase superfamily protein (.1) AT2G28940 448 / 5e-155 Protein kinase superfamily protein (.1.2) AT5G15080 367 / 8e-123 Protein kinase superfamily protein (.1) AT3G28690 355 / 7e-120 Protein kinase superfamily protein (.1.2.3) AT5G47070 356 / 1e-119 Protein kinase superfamily protein (.1) AT3G01300 357 / 4e-119 Protein kinase superfamily protein (.1) AT1G14370 345 / 4e-115 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT2G02800 344 / 8e-115 Kin2, APK2B protein kinase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G225300 [exp] 560 / 0 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.008G036800 [exp] 559 / 0 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G031500 [exp] 462 / 1e-160 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 451 / 2e-156 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 394 / 3e-134 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G149100 [exp] 365 / 2e-123 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 363 / 2e-122 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 360 / 3e-120 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 357 / 3e-119 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038711 [exp] 533 / 0 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 521 / 0 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 438 / 6e-151 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 434 / 1e-149 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026524 [exp] 373 / 9e-129 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10013812 [exp] 372 / 3e-128 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 360 / 3e-120 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 360 / 5e-120 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10001088 [exp] 355 / 1e-119 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10040135 [exp] 354 / 3e-119 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G126000.5 pacid=42769072 polypeptide=Potri.006G126000.5.p locus=Potri.006G126000 ID=Potri.006G126000.5.v4.1 annot-version=v4.1 ATGAACACTGTTGTTTTTGAGTTTTTAGGTTCCTGCATCTTATCAAGGCTTTCTTTCTTTGCTCCTGAATTCGTGACAACCAGATTTATCTACGCGCATT CGTTGGGGGCAATGAAGTGCTTTTCATTCCACAGTGGAGACAAGACGGATGAACCAAAAACTCCAAAGTCAGTCTCTGTTCAATCTGTGAATTCTCCAGG TGCTGATCGTGAAATAGGAAGATCTGGTTCTGAATTGAATTCTCAAAATGTCTCTGGTACCAGCACAGAGTCCATGGTCAGGCCCTCACTTCCTAGTATG TCTCAAAGGCCCAGCAATCTCAGAGTGTTCACAGTTTCTGAGCTTAAGTCAGCTACCAAGAATTTTAGCCGTTCTGTCATGATTGGAGAAGGTGGATTCG GTTGCGTTTATAAAGGATCTATTAAGAGCACCGAGGATCCAACTACAAAGCTTGAAATTGCTGTGAAACAGCTGGGTAAAAGAGGGGTGCAGGGGCACAA AGAATGGGTCACCGAAGTAAATGTTCTTGGAGTAGTCGAGCATCCGAACCTTGTCAAATTAGTTGGTTACTGTGCGGATGAAGATGAAAGAGGAATGCAG CGGCTTCTAATATATGAATTTATGTCCAAGGGAAGTGTTGAGGACCATTTATCCATCCGATCAGATAAACCTCTTCCATGGGCCATGAGACTGAGGATAG CCCAAGATGCTGCTCGTGGCTTAAAGTATCTACATGAAGAAATGGATTTTCAGATCATCTTCAGGGATTTCAAATCATCAAACATTCTTTTAGATGAGCA GTGGAACGCCAAGCTATCAGATTTTGGGTTGGCAAGGCTAGGACCTTCTGAAGGATTGACTCATGTTTCAACTGCGGTTGTAGGAACCATGGGATATGCA GCTCCTGAATACGTCCAAACAGGACGTCTCACATCCAAAAGTGATGTCTGGAGCTATGGGGTCTTCCTTTATGAACTCATTACAGGAAGGCGCCCTTTGG ATCGAAACCGACCCAAGAGTGAGCAGAAGCTCTTGGAATGGATAAGACCATACCTATCAGACGCCAAGAAATTCAAGCAAATAGTGGATCCCAGGCTTGA GCAGAAAGACATCCTCAAGTCAGCCCACAAGCTTGCAAATATAGCCAACCGATGCTTAGTTAGAAACCCAAAATTACGTCCCAAGATGAGTGAGGTGTTG GAAAAGATGAATCAGATTGTAGATGCATCTACAGGGACCGAAAGTGCCCAGCAGTCCTCCAAGAATTCAGCACCAATAAAAACTTCGCACGGCACCACAG CAAAAAATAAAAGGAGAAATGTAGATCTCAAAACTGGAGAAAGCGGCTGGTTTGGTTGGATGTGGAATCCAAAGCATGTTAGAACATGCTAA
AA sequence Show only first row Show all	>Potri.006G126000.5 pacid=42769072 polypeptide=Potri.006G126000.5.p locus=Potri.006G126000 ID=Potri.006G126000.5.v4.1 annot-version=v4.1 MNTVVFEFLGSCILSRLSFFAPEFVTTRFIYAHSLGAMKCFSFHSGDKTDEPKTPKSVSVQSVNSPGADREIGRSGSELNSQNVSGTSTESMVRPSLPSM SQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYKGSIKSTEDPTTKLEIAVKQLGKRGVQGHKEWVTEVNVLGVVEHPNLVKLVGYCADEDERGMQ RLLIYEFMSKGSVEDHLSIRSDKPLPWAMRLRIAQDAARGLKYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSEGLTHVSTAVVGTMGYA APEYVQTGRLTSKSDVWSYGVFLYELITGRRPLDRNRPKSEQKLLEWIRPYLSDAKKFKQIVDPRLEQKDILKSAHKLANIANRCLVRNPKLRPKMSEVL EKMNQIVDASTGTESAQQSSKNSAPIKTSHGTTAKNKRRNVDLKTGESGWFGWMWNPKHVRTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	0	1
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.003G086900 [exp]	1.73	0.9030
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.010G212700 [exp]	5.19	0.8837
AT5G47070			Protein kinase superfamily pro...		Potri.003G085300 [exp]	5.56	0.8822
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G223600 [exp]	5.83	0.9200	PT1.5,PtrPHT1-7
AT2G24360			Protein kinase superfamily pro...		Potri.006G279900 [exp]	7.21	0.8918
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	8.00	0.9071
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180500 [exp]	10.39	0.9028
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011800 [exp]	10.90	0.8968
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028400 [exp]	11.18	0.8846
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Potri.006G135300 [exp]	13.56	0.8515

Compare expression of checked genes

Potri.006G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.