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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Pt-ATNAP12.1

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT2G37010	1377 / 0	ATNAP12	non-intrinsic ABC protein 12 (.1)
AT5G60740	1299 / 0	ABCG28	ATP-binding cassette G28, ABC transporter family protein (.1)
AT1G53390	1166 / 0	ABCG24	ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT1G31770	181 / 2e-47	ABCG14	ATP-binding cassette G14, ATP-binding cassette 14 (.1)
AT3G21090	181 / 4e-47	ABCG15	ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
AT1G51500	177 / 4e-46	AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12	ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1)
AT1G71960	174 / 4e-45	ATABCG25, ABCG25	Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
AT1G17840	174 / 9e-45	AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11	DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
AT4G27420	172 / 2e-44	ABCG9	ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
AT3G25620	167 / 3e-44	ABCG21	ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G169000 [exp]	1356 / 0	AT5G60740	1643 / 0.0	ATP-binding cassette G28, ABC transporter family protein (.1)
Potri.001G058900 [exp]	1348 / 0	AT5G60740	1672 / 0.0	ATP-binding cassette G28, ABC transporter family protein (.1)
Potri.010G225200 [exp]	1345 / 0	AT1G53390	1393 / 0.0	ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.004G236500 [exp]	188 / 1e-49	AT1G31770	970 / 0.0	ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Potri.003G046800 [exp]	183 / 4e-48	AT1G31770	945 / 0.0	ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Potri.010G131900 [exp]	179 / 7e-47	AT3G25620	852 / 0.0	ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2)
Potri.009G051300 [exp]	178 / 3e-46	AT3G21090	943 / 0.0	ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Potri.013G111900 [exp]	177 / 3e-46	AT1G71960	795 / 0.0	Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Potri.001G255800 [exp]	175 / 3e-45	AT3G21090	1038 / 0.0	ATP-binding cassette G15, ABC-2 type transporter family protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10023020 [exp]	1337 / 0	AT2G37010	1484 / 0.0	non-intrinsic ABC protein 12 (.1)
Lus10016115 [exp]	1287 / 0	AT5G60740	1639 / 0.0	ATP-binding cassette G28, ABC transporter family protein (.1)
Lus10041325 [exp]	1228 / 0	AT5G60740	1548 / 0.0	ATP-binding cassette G28, ABC transporter family protein (.1)
Lus10021448 [exp]	1215 / 0	AT5G60740	1559 / 0.0	ATP-binding cassette G28, ABC transporter family protein (.1)
Lus10038714 [exp]	1181 / 0	AT1G53390	1310 / 0.0	ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10037981 [exp]	1177 / 0	AT1G53390	1330 / 0.0	ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10023199 [exp]	962 / 0	AT2G37010	1141 / 0.0	non-intrinsic ABC protein 12 (.1)
Lus10033315 [exp]	177 / 4e-48	AT1G31770	551 / 0.0	ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Lus10035692 [exp]	179 / 8e-47	AT1G31770	1001 / 0.0	ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Lus10034775 [exp]	179 / 1e-46	AT1G31770	1028 / 0.0	ATP-binding cassette G14, ATP-binding cassette 14 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0023 [poplar] [flax]	P-loop_NTPase	PF00005 [poplar] [flax]	ABC_tran	ABC transporter

Representative CDS sequence

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>Potri.006G126100.1 pacid=42768702 polypeptide=Potri.006G126100.1.p locus=Potri.006G126100 ID=Potri.006G126100.1.v4.1 annot-version=v4.1

ATGAGTGCACTGAAGATCAGTAGTATTTGTCGGGTGTCACGTTTTCTATTGTTTCTTATTGTTGTTTTCAATCTATCACCAAATGCATTTTGTGTTGATG

GGGATGATTATAGTCAAACAGGCAACCCAGCATTGCTTCCTATTATTACTGATACGATCTACAAAAGGCTTTCAAATCTCTCTGTAGTGTTCGGTGATGA

TATAATGGATAGTCTGAGTTTTTGCATCAAGAATGTGAAAGCTGATTGGAAAAGAGCATTCGATTTTGAAGGAGACTTGGATTTCATAACTAATTGTATC

AAGAAGATTAAAGGAGATATCACTCTGAGATTGTGTACAGCAGCAGAAATCAAATTCTACTTCGGTAGTCTCTTTGGGCAGGGGACAACAGATCAGACTC

ACTATTTAAAACCAAATAAGAACTGCAATTTATCCTCGTGGCCTAATGGGTGTGAACCAGGATGGGGTTGCGGTGCTAATCCAAATCAGAAAATCGATCT

CTATAATTCAAAGGACATGCCTTTAAGGACTCGTGACTGTCAACCGTGTTGTGAGGGATTTTTCTGCCCCCAAGGCCTTACCTGCATGATACCTTGCCCA

TTAGGTTCTTATTGTCCATCCGCAAAGCTTAATAAAACTACCGGAATGTGTACCCCATATGGTTACCAAATACCCCCTGGACATCCAAATCATACTTGTG

GTGGTGCAGATGCATGGGCTCCTGTTGCGGCGAGTAGTGAAATTTTCTGTGCACCAGGATCATACTGCCCAAGAACAACGCTTAAAGTTCCTTGCAGTAG

TGGACATTACTGCAGGATGGGCTCCACTTCTCAAATATCGTGCTTCAAGTTAGTCACATGCCATCCTAATACTGCAAACCAAAACCTTCATGCATACGGA

ATCATGCTTATTGCTGCAGTGACTACTCTTCTTCTCATTATTGTTAACTGCTCTGACCAGGCTCTCTCTACACGAGAAAAAAGAGCAGCTAAATCCAGAG

AAGCCGCAGCAAGGCAAGCACGAGAAACTGCACAAGCACGTGAAAGGTGGAAAGTTGCAAAAAATGTTGCCAAGAAAGGGGGATCCGCGCTGCAAGCACA

GTTGTCCCAGACATTTTCTCGCAGAACATCTGGATTTAAAGCAGAGCAGCCAAAGGTTTCAGATGTGGGTAAATCTCAAACTGAGGCTGCTTTGTTACCA

CCTATGCCTTCAGGTACTGCAAGTGCATCATCCGAGAAAGCAAAGAAAAAAGAACCAAGCACCCTTACAAAAATGATGCATGCTCTTGAAGATGATCCTG

ATGGTCAGGAAGGATTTAAATTGGAGATTGGAGACAAAAATATAAAAAAGCAAATGCCAAAGGGTAAACAATTGCATTCTCACACCCAAATTTTCAAGTA

TGCATATGGTCAGATTGAGAAGGAGAAAGCTATGCAGCAGGACCAAAAGAACCTGACTTTCTCAGGAATAATTTCAATGGCTACTGATACTGATGTCAAG

ACTAGGCCTGTGATTGAGGTTGCATTTAAGGATTTAACCCTCACGTTGAAAGGAAAAAAGAAACATCTGATGAGGGGTGTCACTGGGAAAATCATGCCCG

GCAGAGTTTCTGCTGTCATGGGACCATCTGGAGCTGGCAAGACTACTTTTCTTTCTGCCTTGGCAGGAAAAGCAACTGGATGCACTATGACAGGCTCAAT

TCTCATAAATGGGAAGAATGAATCAATCCATTCATATAAGAAAATTATTGGTTTTGTTCCACAAGATGATATTGTTCATGGGAACCTGACAGTGGAAGAA

AATCTGCGATTCAGTGCAAGGTGCCGATTATCTGCCGACATGCCTAAAGCTGATAAGGTTCTGGTTATTGAAAGAGTTATTGAGGCATTGGGACTGCAGA

CGGTGAGGGATTCTGTGGTTGGGACTGTGGAGAAACGAGGAATTTCTGGAGGCCAGAGAAAACGTGTGAATGTTGGGCTTGAAATGGTCATGGAACCTTC

ACTACTGATTTTAGATGAGCCTACATCTGGTTTGGACAGTTCATCATCACTGTTACTTATAAGAGCTCTACGACGTGAAGCACTAGAAGGGGTAAACATC

TGCATGGTAGTACATCAACCAAGCTATGCCCTGTTCAAGATGTTTGATGATTTTATACTTCTGGCAAAAGGTGGCCTCACTGTTTATCATGGATCTGCAA

AGAAAGTTGAAGAATACTTTGCTGGCCTTGGGATCACTGTACCAGAGCGTGTTACTCCTCCAGATCACTATATTGACATTCTGGAGGGTATAGTGAAAAC

AAACTCAAATGTGACTCATGAACAACTACCTATCAGATGGATGCTGCATAACGGGTATCCAGTACCACCAGACATGTTGCACTATGCTGATAGCATTGGT

GCAATCTCTTCTGGCTTAAACTCAAGTGCTGCGGAGTCCACAGAACAATCTTTTGCTGGGGATTTATGGGCAGATGTTGTTTCTAATGTTGAGCTTCATC

GAGATCATATAGAGCGCAACTATTTGAAGTCTAAGGATTTATCCAACCGAAGAACTCCTGGAGTTTCCCGTCAGTATAGATATTTCGTTGGAAGGATTTG

CAAGCAACGACTACGAGAAGCTAGACTACAAGCAGTTGACTATTTGATTCTATTACTGGCTGGAGCCTGCTTAGGAACTCTTGCTAAAGTGGACGATGAA

ACATTTGGGTCCCTTGGTTATACTTACACTGTCATTGCTGTTTCGCTGCTATGCAAGATTGCAGCATTACGATCATTTACGCAGGATAAATTACATTACT

GGAGAGAGAGTGAATCTGGAATCAGCAGTCTAGCTTATTTTTTATCGAAGGACACAATTGATCATTTCAACACAATTGTCAAGCCTCTAGTTTATTTATC

CATGTTTTATTTCTTCAACAGTCCTAGATCAACATTTGCTGACAATTATGTGGTTCTGCTTTGCCTAGTGTACTGTGTGACTGGCATAGCTTACATTTTT

GCAATCTACTTTGCACCAGGTCCTGCCCAGCTGTGGTCAGTGCTTCTTCCTGTTGTCCTGACTCTTGTTGCAAGCCAGGAGCAAGATAGTATACTGGTGA

GGCATTTGGGATATCTGTGCTACCCAAAGTGGGCTATGGAAGCTTTTGTTATTGCAAATGCTGAAAGATACTCCGGTGTCTGGTTGATAACTCGCTGCAA

CTCACTGAGGGAAAATGGCTACGATCTTGGTCATTGGGGTCTTTGTCTACAACTTCTCATTCTGACAGGCATACTCAGCCGTTTTGCAGCTTTTTTCCTG

CTGGTGACCTTCCAAAAGAAGTGA

AA sequence

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>Potri.006G126100.1 pacid=42768702 polypeptide=Potri.006G126100.1.p locus=Potri.006G126100 ID=Potri.006G126100.1.v4.1 annot-version=v4.1

MSALKISSICRVSRFLLFLIVVFNLSPNAFCVDGDDYSQTGNPALLPIITDTIYKRLSNLSVVFGDDIMDSLSFCIKNVKADWKRAFDFEGDLDFITNCI

KKIKGDITLRLCTAAEIKFYFGSLFGQGTTDQTHYLKPNKNCNLSSWPNGCEPGWGCGANPNQKIDLYNSKDMPLRTRDCQPCCEGFFCPQGLTCMIPCP

LGSYCPSAKLNKTTGMCTPYGYQIPPGHPNHTCGGADAWAPVAASSEIFCAPGSYCPRTTLKVPCSSGHYCRMGSTSQISCFKLVTCHPNTANQNLHAYG

IMLIAAVTTLLLIIVNCSDQALSTREKRAAKSREAAARQARETAQARERWKVAKNVAKKGGSALQAQLSQTFSRRTSGFKAEQPKVSDVGKSQTEAALLP

PMPSGTASASSEKAKKKEPSTLTKMMHALEDDPDGQEGFKLEIGDKNIKKQMPKGKQLHSHTQIFKYAYGQIEKEKAMQQDQKNLTFSGIISMATDTDVK

TRPVIEVAFKDLTLTLKGKKKHLMRGVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKATGCTMTGSILINGKNESIHSYKKIIGFVPQDDIVHGNLTVEE

NLRFSARCRLSADMPKADKVLVIERVIEALGLQTVRDSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSLLLIRALRREALEGVNI

CMVVHQPSYALFKMFDDFILLAKGGLTVYHGSAKKVEEYFAGLGITVPERVTPPDHYIDILEGIVKTNSNVTHEQLPIRWMLHNGYPVPPDMLHYADSIG

AISSGLNSSAAESTEQSFAGDLWADVVSNVELHRDHIERNYLKSKDLSNRRTPGVSRQYRYFVGRICKQRLREARLQAVDYLILLLAGACLGTLAKVDDE

TFGSLGYTYTVIAVSLLCKIAALRSFTQDKLHYWRESESGISSLAYFLSKDTIDHFNTIVKPLVYLSMFYFFNSPRSTFADNYVVLLCLVYCVTGIAYIF

AIYFAPGPAQLWSVLLPVVLTLVASQEQDSILVRHLGYLCYPKWAMEAFVIANAERYSGVWLITRCNSLRENGYDLGHWGLCLQLLILTGILSRFAAFFL

LVTFQKK

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Potri.006G126100 [exp]	0	1	Pt-ATNAP12.1
					Potri.012G032376 [exp]	14.73	0.8296

Potri.006G126100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Pt-ATNAP12.1 (Potri.006G126100) [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.006G126100 coexpression network