Plant FIBer expression Database

Potri.006G126401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45160 38 / 0.0001 Putative membrane lipoprotein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G126401.1 pacid=42769831 polypeptide=Potri.006G126401.1.p locus=Potri.006G126401 ID=Potri.006G126401.1.v4.1 annot-version=v4.1
ATGAAGCAAGCGATAGTGTTTATTTTCGGTGTGATGTTCATGGTGGGATCTTGCATGGCAGCACCGAGAAGGGAAATGATCGGTGGAATATACGGGCAAG
AGCAGCGACAACATGTTGGGAGGGGAAAAATAATTGAAGGCAGAACGAGCAAAGTTCACTACCCAGACAGAAACATTGACAACCACCATAGCATACCTAG
ACAAAACTACAACGACTGGGGTGCTGGCAGCAGTGGCAGTTCTCAAGGAGATAACGGCGATGATGGGAGTGGGTAA
AA sequence
>Potri.006G126401.1 pacid=42769831 polypeptide=Potri.006G126401.1.p locus=Potri.006G126401 ID=Potri.006G126401.1.v4.1 annot-version=v4.1
MKQAIVFIFGVMFMVGSCMAAPRREMIGGIYGQEQRQHVGRGKIIEGRTSKVHYPDRNIDNHHSIPRQNYNDWGAGSSGSSQGDNGDDGSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G126401
[exp]
0 1
AT1G31770 ABCG14 ATP-binding cassette G14, ATP-... Potri.003G046800
[exp]
2.44 0.8771
AT5G10625 unknown protein Potri.018G005200
[exp]
9.21 0.8594 Pt-FPF1.1
AT4G24050 NAD(P)-binding Rossmann-fold s... Potri.001G086900
[exp]
10.86 0.8786
AT5G43680 unknown protein Potri.002G045500
[exp]
15.81 0.7353
AT5G24860 ATFPF1, FPF1 ARABIDOPSIS FLOWERING PROMOTIN... Potri.010G024500
[exp]
17.32 0.8691
AT4G23340 2-oxoglutarate (2OG) and Fe(II... Potri.003G128100
[exp]
25.23 0.8173 2OGox5
AT5G48130 Phototropic-responsive NPH3 fa... Potri.014G164000
[exp]
27.62 0.8399
AT1G75540 CO LHUS, AtBBX21, ... long hypocotyl under shade, B-... Potri.005G234500
[exp]
27.82 0.8426 Pt-COL6.1
AT5G10970 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.003G180600
[exp]
31.24 0.7668
AT2G30590 WRKY WRKY21 WRKY DNA-binding protein 21 (.... Potri.003G111900
[exp]
33.33 0.8244

Potri.006G126401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.