Plant FIBer expression Database

Potri.006G126600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37035 360 / 8e-121 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G091400
[exp]
650 / 0 AT2G37035 337 / 6e-112 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013807
[exp]
516 / 0 AT2G37035 436 / 9e-151 unknown protein
Lus10026520
[exp]
513 / 1e-180 AT2G37035 434 / 5e-150 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G126600.1 pacid=42767568 polypeptide=Potri.006G126600.1.p locus=Potri.006G126600 ID=Potri.006G126600.1.v4.1 annot-version=v4.1
ATGACCGATCAGTCGTCTCGTCTGAGCATCACCAATCTCCGGACAGCTTCACAGCTAATCAAACAGACAGCCACAATCTTCTCATCCAATCTCTTCACCT
TAATTTTCTTGTCTTTATTGCTCTTCTCTTTCCGTACATTCATCGAAAATGGGACCCACGTCCTCACTTCTTTCATCGACCGCGACCCTTCTCTCAAATC
CCTCCTTTCCCGTCTCGACCTTGCCGGCCAACCCCACCCCTCCCACCCCCACCACCGCATTCACACTCGCCTCCCTCGCCGTCGCCGCCCATTCCTGCAC
CTCACCCGTGTTGGTACCCTAGATGATGATTTCTTTTCTGCTGATGACGAAGCTGATTCCTCCCTCTTCCCAAAGTTCCCTCCCAATGGCAGTTTCGTGA
TTCTCCACAACTTCGACCCCAAATTTGGTTTCTCCGATCTCGTCATCGATAATGGGATTAAAGTCCCAGAAATTGTCAGGTCCGGCATTCAGTTCAAGGC
TGCGGAAGAAAATCATTCATTTCTTGATAGTAAAAACAATAATAACGAGATTGAAAGCAGCAGCGAGGATTTTAATAATAATGAGAGTGGAAAAGAAGGG
GAGGATAAGATTTTGGATTTGCAATTTTTAGTGAAGGGATTGGAATTGGGGAGACGCGACACAGCTGCCTTGTTTTTTCTTGTAAGTTTTCTATCTGCTG
CTTATGGTTGGGTTATTTTGGGATTTACAGCAATATATTCGTGGATTTTGGGGGTTGTTTTTATTGTTGTTGTTAATGATTTGTTAGGAAGGTATGGTTC
CTTTATTGGTGTTGTTTGGAATGGGTCTAGATTAGGGAGTAAGAGATTAGCTGGGTTTATTTTGATGAGGTGGGCTGTGAGGGATGCTTTGACTCAGTTG
GTGGGTTTGTGGTTTTTTGGTGAAATTGAAGATCAGTATTCGTTTTTTAAGCTTTTCGTGAGGTTGAAATTGATGCCCTTTTCTGTTATGTTTCCATGGA
TTAATGGGTTTGACAAGGAGATTTCGGGGTTTTTTGTTACTTGGATGTTGGTGGATGTGGTTGTGGGGTTTATATTTGCTGTGGATGCTTGGGTTACTGT
TGTGGATACAAGGAGGACTGGGAGAGAGATTTTGAAAGAAGGTTGTTATTTGATATCCACTATGTTTCATCAGGCAGTACAGCTTAAATGTTATGAAGAA
ATACTTTGTGGGTCAGCTGCAAGATGGGTTTTTGCTCGGGTTTTTGGGAAGTTTTTCGCCATTCTTTTGCAGTCAGCTTTTGAGGTTTACTTTATGGTGG
CTTGGCTGATTTTTTACTTTGTGGCGAGGTGTAAAGAAGCTGATTCTGATGGAAGGAGGTTTGGGAGGAGAGAATTGGAGGTGTTGATTGATGGCCTAAG
ATGA
AA sequence
>Potri.006G126600.1 pacid=42767568 polypeptide=Potri.006G126600.1.p locus=Potri.006G126600 ID=Potri.006G126600.1.v4.1 annot-version=v4.1
MTDQSSRLSITNLRTASQLIKQTATIFSSNLFTLIFLSLLLFSFRTFIENGTHVLTSFIDRDPSLKSLLSRLDLAGQPHPSHPHHRIHTRLPRRRRPFLH
LTRVGTLDDDFFSADDEADSSLFPKFPPNGSFVILHNFDPKFGFSDLVIDNGIKVPEIVRSGIQFKAAEENHSFLDSKNNNNEIESSSEDFNNNESGKEG
EDKILDLQFLVKGLELGRRDTAALFFLVSFLSAAYGWVILGFTAIYSWILGVVFIVVVNDLLGRYGSFIGVVWNGSRLGSKRLAGFILMRWAVRDALTQL
VGLWFFGEIEDQYSFFKLFVRLKLMPFSVMFPWINGFDKEISGFFVTWMLVDVVVGFIFAVDAWVTVVDTRRTGREILKEGCYLISTMFHQAVQLKCYEE
ILCGSAARWVFARVFGKFFAILLQSAFEVYFMVAWLIFYFVARCKEADSDGRRFGRRELEVLIDGLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37035 unknown protein Potri.006G126600
[exp]
0 1
AT5G41770 crooked neck protein, putative... Potri.003G137200
[exp]
10.24 0.7310
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.014G051200
[exp]
10.58 0.7284
AT1G13190 RNA-binding (RRM/RBD/RNP motif... Potri.010G051600
[exp]
15.09 0.7263
AT4G34610 HD BLH6 BEL1-like homeodomain 6 (.1.2) Potri.009G120800
[exp]
24.91 0.6698
AT1G28060 Pre-mRNA-splicing factor 3 (.1... Potri.010G213300
[exp]
33.39 0.6941
AT5G04670 Enhancer of polycomb-like tran... Potri.010G235900
[exp]
33.67 0.6761
AT1G53750 RPT1A regulatory particle triple-A 1... Potri.001G161700
[exp]
36.76 0.6705 Pt-RPT1.4
AT5G22000 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) Potri.006G200200
[exp]
39.37 0.6408
AT5G06560 Protein of unknown function, D... Potri.006G199000
[exp]
48.28 0.6335
AT4G19670 RING/U-box superfamily protein... Potri.015G117600
[exp]
51.38 0.6308

Potri.006G126600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.