Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAL3,Pt-PAL1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37040 1270 / 0 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) AT3G53260 1247 / 0 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 (.1) AT3G10340 1176 / 0 PAL4 phenylalanine ammonia-lyase 4 (.1) AT5G04230 1038 / 0 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091100 [exp] 1412 / 0 AT2G37040 1267 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224100 [exp] 1255 / 0 AT3G53260 1240 / 0.0 phenylalanine ammonia-lyase 2 (.1) Potri.008G038200 [exp] 1245 / 0 AT2G37040 1213 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224200 [exp] 1238 / 0 AT2G37040 1228 / 0.0 PHE ammonia lyase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026518 [exp] 1312 / 0 AT2G37040 1256 / 0.0 PHE ammonia lyase 1 (.1) Lus10013805 [exp] 1298 / 0 AT2G37040 1245 / 0.0 PHE ammonia lyase 1 (.1) Lus10023531 [exp] 1228 / 0 AT2G37040 1198 / 0.0 PHE ammonia lyase 1 (.1) Lus10040416 [exp] 1226 / 0 AT2G37040 1194 / 0.0 PHE ammonia lyase 1 (.1) Lus10009220 [exp] 138 / 7e-34 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10001405 [exp] 112 / 1e-29 AT3G10340 122 / 3e-34 phenylalanine ammonia-lyase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00221 [poplar] [flax] Lyase_aromatic Aromatic amino acid lyase
Representative CDS sequence Show only first row Show all	>Potri.006G126800.1 pacid=42770648 polypeptide=Potri.006G126800.1.p locus=Potri.006G126800 ID=Potri.006G126800.1.v4.1 annot-version=v4.1 ATGGAGACAATCACCAAGAATGGCTACCAAAATGGTTCTTCGGAGAGTTTGTGTACCCAACGTGATCCACTCAGCTGGGGTGTTGCTGCTGAGGCAATGA AAGGAAGCCATTTGGACGAAGTGAAACGTATGGTAGCCGAGTATAGGAAGCCTGTTGTGAATCTTGCTGGTCAGACCTTGACCATTGCTCAGGTTGCATC CATTGCTGGCCATGATGCTAGTAATGTCAAGGTGGAACTTTCTGAGTCTGCAAGACCTCGTGTCAAGGCTAGCAGTGACTGGGTCATGGATAGCATGGAC AAGGGAACTGATAGTTATGGTGTTACTACTGGTTTTGGTGCTACTTCCCATAGAAGAACCAAACAAGGTGGTGCTCTTCAGAAGGAACTCATTAGATTCT TGAATGCTGGGATCTTTGGCAATGGAACAGAAACTTGCCACACACTGCCTCACTCAGCTACTAGAGCAGCTATGCTTGTCAGGATCAACACTCTCCTCCA AGGTTACTCTGGCATCAGATTTGAAATCTTGGAAGCAATTACCAAGCTACTTAATAACAACATCACTCCATGCTTGCCACTACGTGGTACAATCACTGCT TCAGGTGATTTAGTCCCATTATCCTACATTGCTGGATTACTGACTGGAAGGCCTAATTCCAAGGCCACTGGTCCCAACGGAGAAGTGCTGGATGCTGTGG AAGCCTTTAAAGCTGCTGGTATTGATTCTGGATTCTTTGAGTTGCAGCCTAAAGAAGGCCTCGCTCTTGTTAATGGAACTGCAGTTGGTTCTGGTTTGGC TTCCATGGTTCTTTTCGAGACCAACGTTCTTGCTGTCTTATCAGAACTCATATCTGCAATTTTCGCCGAGGTTATGAATGGTAAACCTGAATTCACTGAC CATCTGACACACAAATTGAAGCACCATCCAGGTCAAATTGAGGCTGCTGCTATAATGGAGCACATTTTAGATGGCAGCGCTTACATGAAGGCAGCTAAGA AGTTGCATGAAATGGACCCCTTGCAGAAACCAAAGCAAGATCGCTATGCTCTGAGGACTTCACCCCAATGGCTTGGCCCCCAGATTGAAGTGATCCGATT CTCAACCAAGTCAATTGAAAGAGAGATTAATTCAGTGAATGACAACCCTCTAATTGATGTTTCAAGGAACAAGGCCTTACATGGTGGCAACTTCCAGGGA ACTCCAATTGGAGTCTCAATGGACAATGTACGTTTGGCTATTGCATCTATAGGCAAGCTCCTATTCGCTCAGTTCAGTGAGCTCGTAAATGATTTCTACA ACAATGGATTGCCATCAAATCTCACTGCTAGCAGAAATCCAAGTCTGGATTATGGTTTCAAAGGAGCTGAAATAGCAATGGCCTCCTACTGTTCTGAGCT TCAGTATCTCGCTAATCCAGTCACCAGCCATGTGCAAAGTGCCGAGCAGCACAATCAAGATGTTAACTCGTTGGGACTTATTTCTTCAAGAAAGACAGCA GAATCTGTCGATATCTTGAAACTCATGTCCACAACTTTCTTAGTGGCACTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAGGAGCGCTG TCAAGAACACTGTTAGTCATGTATCCAAGAGGGTTTTAACTACAGGTGCTAATGGAGAACTTCACCCATCAAGGTTCTGTGAGAAGGAGTTGCTCAAGGT GGTTGATCGTGAAGATGTCTTTGCTTACGCCGATGACCCCTGCAGTGCTACCTATCCATTGATGCAAAAACTAAGGCAAGTTCTTGTTGACCATGCATTG GCAAATGGAGAGAATGAGAAGAACACAAGCACTTCAGTCTTCCAAAAGATTACAGCTTTCGAGGAAGAATTGAAGGCCCTTTTGCCTAAAGAGGTTGAGA GCGCAAGAGCAGCATATGATAGTGGGAATTCAGCAATTGAGAATAAGATTAAGGAATGCAGGTCTTATCCACTGTACAAGTTTGTGAGGGAGGAGTTGGG AACTGGATTGCTCACTGGTGAAAAGGTCCGATCGCCTGGTGAGGAGTTCGACAAGGTGTTTACAGCCATGTGCCAGGGGAAGATCATTGACCCAATGCTG GAATGCCTTGGTGAATGGAATGGTGCCCCTCTTCCAATCTGTTGA
AA sequence Show only first row Show all	>Potri.006G126800.1 pacid=42770648 polypeptide=Potri.006G126800.1.p locus=Potri.006G126800 ID=Potri.006G126800.1.v4.1 annot-version=v4.1 METITKNGYQNGSSESLCTQRDPLSWGVAAEAMKGSHLDEVKRMVAEYRKPVVNLAGQTLTIAQVASIAGHDASNVKVELSESARPRVKASSDWVMDSMD KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITA SGDLVPLSYIAGLLTGRPNSKATGPNGEVLDAVEAFKAAGIDSGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSELISAIFAEVMNGKPEFTD HLTHKLKHHPGQIEAAAIMEHILDGSAYMKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQG TPIGVSMDNVRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTA ESVDILKLMSTTFLVALCQAIDLRHLEENLRSAVKNTVSHVSKRVLTTGANGELHPSRFCEKELLKVVDREDVFAYADDPCSATYPLMQKLRQVLVDHAL ANGENEKNTSTSVFQKITAFEEELKALLPKEVESARAAYDSGNSAIENKIKECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKVFTAMCQGKIIDPML ECLGEWNGAPLPIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.006G126800 [exp]	0	1	PAL3,Pt-PAL1.2
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471400 [exp]	1.41	0.8473	Pt-ARP8.1
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076600 [exp]	2.00	0.8385
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.005G011200 [exp]	2.82	0.8608
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.016G091100 [exp]	4.69	0.7828	PAL1.3,PAL4
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.006G167200 [exp]	5.19	0.7841	PSC450.2
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Potri.017G115500 [exp]	8.48	0.7432
AT5G18460			Protein of Unknown Function (D...		Potri.019G024100 [exp]	11.48	0.8445
					Potri.018G104801 [exp]	13.22	0.8281
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G033600 [exp]	13.49	0.7775	STP1.1
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114400 [exp]	21.33	0.7250

Compare expression of checked genes

Potri.006G126800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.