Plant FIBer expression Database

Potri.006G127050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G127050.1 pacid=42768986 polypeptide=Potri.006G127050.1.p locus=Potri.006G127050 ID=Potri.006G127050.1.v4.1 annot-version=v4.1
ATGATGACACGTGTGCCATGGAACACATTATCTATCGCCCAGCATCAGAAAACATGCCACCACGCACGCTTCTCCATTGTTATAAGAATTTTGCTTTTTC
TTGCTTCGTATCATGCGACCGACGAGGATTTCTTGCTGAATCTCAATCGCAAACAATCCACAAAGAGGGTGTCTGGTCCCCGTTCAAGAAAGAAAGAAAA
AGGAAAAAAAGATCCGTTCGTCCTTAATGCTTGTTTTATATGGTTCTTGAGATGCTGCTTTGTCCAGATATTGAGGTTTACATTTGCACCCCAAATGTTC
AAAGGGATTCAATGTAGAAATGCTTTGTTTCATGCTTCTATCTTTTCGTTGCCATGCCCAGTTTATGGTGTTGATTTGACTGGGTAA
AA sequence
>Potri.006G127050.1 pacid=42768986 polypeptide=Potri.006G127050.1.p locus=Potri.006G127050 ID=Potri.006G127050.1.v4.1 annot-version=v4.1
MMTRVPWNTLSIAQHQKTCHHARFSIVIRILLFLASYHATDEDFLLNLNRKQSTKRVSGPRSRKKEKGKKDPFVLNACFIWFLRCCFVQILRFTFAPQMF
KGIQCRNALFHASIFSLPCPVYGVDLTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G127050
[exp]
0 1
AT3G62620 sucrose-phosphatase-related (.... Potri.002G198200
[exp]
5.19 0.7903
AT3G56830 Protein of unknown function (D... Potri.002G146000
[exp]
6.00 0.8188
AT5G63480 unknown protein Potri.012G099200
[exp]
8.66 0.8111
AT4G14746 unknown protein Potri.010G082500
[exp]
10.72 0.7764
AT3G48070 RING/U-box superfamily protein... Potri.012G074500
[exp]
12.64 0.8013
AT1G50170 ATSIRB sirohydrochlorin ferrochelatas... Potri.001G178800
[exp]
13.30 0.8259
AT1G29040 unknown protein Potri.011G064600
[exp]
15.49 0.7760
AT5G08320 unknown protein Potri.005G090400
[exp]
15.62 0.7100
AT1G14140 Mitochondrial substrate carrie... Potri.010G165900
[exp]
16.49 0.8042
AT4G01280 MYB Homeodomain-like superfamily p... Potri.002G163100
[exp]
17.54 0.7983

Potri.006G127050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.