Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30080 677 / 0 ARF ARF16 auxin response factor 16 (.1) AT2G28350 646 / 0 ARF ARF10 auxin response factor 10 (.1) AT1G77850 363 / 4e-117 ARF ARF17 auxin response factor 17 (.1) AT1G59750 258 / 2e-76 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT1G19850 256 / 1e-73 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G60450 247 / 4e-71 ARF ARF4 auxin response factor 4 (.1) AT5G62000 243 / 3e-69 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT2G46530 223 / 1e-63 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 221 / 3e-63 ARF ARF18 auxin response factor 18 (.1) AT2G33860 210 / 5e-59 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090300 [exp] 1155 / 0 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.010G223200 [exp] 832 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 824 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 772 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.009G014800 [exp] 734 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.002G089900 [exp] 379 / 5e-123 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 378 / 1e-122 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.011G059300 [exp] 255 / 2e-74 AT2G33860 566 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.009G011800 [exp] 255 / 2e-74 AT5G60450 830 / 0.0 auxin response factor 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026510 [exp] 815 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 772 / 0 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 596 / 0 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 595 / 0 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 509 / 8e-173 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10024754 [exp] 369 / 4e-119 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10024753 [exp] 368 / 1e-118 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 363 / 5e-117 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10016091 [exp] 300 / 1e-96 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10013942 [exp] 248 / 2e-72 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.006G127500.1 pacid=42768178 polypeptide=Potri.006G127500.1.p locus=Potri.006G127500 ID=Potri.006G127500.1.v4.1 annot-version=v4.1 ATGATAACATTCATGGAAGCAAAAGATAAATTGAAGGAAGAAGCTGACAAGTGCTTAGATTCTCAGTTATGGCATGCCTGCGCCGGTGGCATGGTCCAAA TGCCGGCGGTGAATTCTAAGGTCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCTTGTGAGCCTGTTGATTTCAGGAACTTGCCCCGTGTTTCTCATAA TCTATGCAGAGTCTCGGATATCAAATTCATGGCTGATCCTGAAACTGATGAGGTCTTCGCTAAAATTAGGTTGGTTCCAATTAATTCTAATGAACTCGAT TTGGATGACCAAGAAGTTGCAGTTAATGGTGGAATGGAAGCCGCGCAAGACAATAATAAACCGGTTTCTTTTGCTAAGACACTGACTCAATCTGATGCAA ATAACGGCGGAGGTTTCTCCGTTCCAAGGTACTGTGCTGAGATGATTTTTCCACGGTTGGATTACACAGCAGATCCTCCCGTGCAGACCCTTCTTGCTAA GGATGTTCACGGTGAGACATGGAAGTTTAGGCATATCTATAGAGGGACACCGAGAAGGCATCTTTTGACAACTGGATGGAGCCCATTTGTGAATCATAAG AAGCTTATTGCTGGTGATTCTGTTGTTTTTTTTAGGGCAGAAAATGGAGATCTTTGCGTTGGTGTTCGAAGAGCTAAGAGGGCGAGTGGTGGTGGACCTG AGTCCTTGTGGAATCCGGCTGGTGGGAGTTCTGCAGTGCCTAGTGGGGGTTTTGGTGCGTTCTTGAGGGAAGATGAGCATAAGTTGATGAGAAGCGGAAG TGGTAATGGCAATGGTTCAAAGTCAAACGAAAGTTTGATGGGACAAGGGAAAGTAAGGGCCGAATCGGTTATTCAAGCTGTTACTCTTGCTGCAAATGGT CTGCCTTTTGAGGTGGTTTACTACCCTCGAGCCAATACTCCCGAGTTCTGTGTGAAGGCCTCTTTGGTAAAAACAGCAATGCAGATCCGGTGGTGTTCGG GGATGCGGTTCAAGATGGCCTTTGAAACTGAGGACTCTTCCCGGATTAGTTGGTTCATGGGTACTGTTTGTTCTGTTCAGGCTGCTGATTCTCTTTGGTG GCCGCATTCACCATGGAGACTTCTCCAGGTTACATGGGATGAACCTGATTTGCTTCAAAATGTGAAACGTGTTAGCCCATGGCTAGTGGAATTGGCATCA AATATGGCTGCTATTCATTTTCCCCCCTTCTCATCACCAAGGAAGAAGTTGAGACTTCCACAACACCTGGATTTTCCCATTGACGGTCAATTTCCAATGC CGATATTTTCCGGCAACCTCCTTGGGCCAAGCAGTTCCTTTGATTTTCTACCCCACAACACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGG TCTACCACTATCAGATCCCCACCTCAATAAACTGCAAACAGGTCTGCTTCGGACTGGTTTTCCGCCACTGCTTGATCATACTGCTTCACTCACTAAAGCC TCAAATGTCCAAACCATTCCAAAGCCTAGCATGTGTGAAGATGTTTCTTGTGAGCTGACAATGGCACATTCTACCCAGACTTCAAAGAAAGCTGTTGATG TGAAGATACCTCAGCTTGTACTTTTTGGTCAACCAATACTTGCTGAGCAGCAGATATCTCTTAGCTGCCCTGGTAATGCTGCCTCACCAGTTCTTACTGG AAATAGTTCTTCTGAAGGAAATTTAGATAAGATGGCAAATTTTTCTGATGGCTCTGTGTCCACTCTTCATCGCCGAGGCCTACCAGAGTGCTCCTCGTGT GAAGAATTGCAATGGAACAAGGACAAGCACCAAAAGAGTGAGCCATCTTTAGAGACTGGTCACTGCAAAGTCTTCATGGACTCAGAAGATGTAGGTCGCA CACTTGACCTTTCATTGCTTGGATCTTATGAAGAATTGTACAGAAAGCTGGCTAACATGTTTGGCCTAAGGAATTCCGAGAAATTTAGCAATGTGCTTTA CCGTGACATTAATGGCATTACCAAACACATTGGTGAGGAACCATTCAGTGACTTCTTCAAAACAGCAAGGAGGCTGACAATTGTAACAGATTCAAGCAGT GGCAATGTAGGGATTTAG
AA sequence Show only first row Show all	>Potri.006G127500.1 pacid=42768178 polypeptide=Potri.006G127500.1.p locus=Potri.006G127500 ID=Potri.006G127500.1.v4.1 annot-version=v4.1 MITFMEAKDKLKEEADKCLDSQLWHACAGGMVQMPAVNSKVFYFPQGHAEHACEPVDFRNLPRVSHNLCRVSDIKFMADPETDEVFAKIRLVPINSNELD LDDQEVAVNGGMEAAQDNNKPVSFAKTLTQSDANNGGGFSVPRYCAEMIFPRLDYTADPPVQTLLAKDVHGETWKFRHIYRGTPRRHLLTTGWSPFVNHK KLIAGDSVVFFRAENGDLCVGVRRAKRASGGGPESLWNPAGGSSAVPSGGFGAFLREDEHKLMRSGSGNGNGSKSNESLMGQGKVRAESVIQAVTLAANG LPFEVVYYPRANTPEFCVKASLVKTAMQIRWCSGMRFKMAFETEDSSRISWFMGTVCSVQAADSLWWPHSPWRLLQVTWDEPDLLQNVKRVSPWLVELAS NMAAIHFPPFSSPRKKLRLPQHLDFPIDGQFPMPIFSGNLLGPSSSFDFLPHNTPAGMQGARHAHYGLPLSDPHLNKLQTGLLRTGFPPLLDHTASLTKA SNVQTIPKPSMCEDVSCELTMAHSTQTSKKAVDVKIPQLVLFGQPILAEQQISLSCPGNAASPVLTGNSSSEGNLDKMANFSDGSVSTLHRRGLPECSSC EELQWNKDKHQKSEPSLETGHCKVFMDSEDVGRTLDLSLLGSYEELYRKLANMFGLRNSEKFSNVLYRDINGITKHIGEEPFSDFFKTARRLTIVTDSSS GNVGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.006G127500 [exp]	0	1
AT5G20300		Toc90	translocon at the outer envelo...		Potri.006G063500 [exp]	6.48	0.8228
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	7.87	0.8322
AT3G52610			unknown protein		Potri.006G210900 [exp]	8.12	0.7896
AT1G70590			F-box family protein (.1)		Potri.010G045300 [exp]	9.59	0.7983
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.003G129800 [exp]	14.14	0.8279
AT5G47040		LON2	lon protease 2 (.1)		Potri.003G086000 [exp]	17.49	0.8244	LON.2
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.002G235900 [exp]	24.14	0.8138
AT1G07310			Calcium-dependent lipid-bindin...		Potri.009G043300 [exp]	27.56	0.8187
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G017100 [exp]	40.95	0.8102
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.006G081700 [exp]	41.49	0.8078

Compare expression of checked genes

Potri.006G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.