Plant FIBer expression Database

Potri.006G128550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G128550.1 pacid=42768778 polypeptide=Potri.006G128550.1.p locus=Potri.006G128550 ID=Potri.006G128550.1.v4.1 annot-version=v4.1
ATGCAATGTTTTTTAATGACAGAATCACACACCCTCTTTCCATCAAAGTATACGTTGAAAGTGTCAAAGTTGAAAGCGTTTCAATTGCTAAGAACACTGT
TTTACACTCCAAAATGGAGTCAGCAGCCAATCGATGATATCTTTGAACAGTCCTGGTCAAAGCAGAGTCCATGTAATGGTCCTCCGTGCACGTTGATGCG
GACACGAGGTAAAATCGAAGACGCCCAGAAGTCTCGACTGAAACAATCGAGGAAGGAATCGATAGAGTTGATCTACAAATTTGAGGTCTCCAAACGTTGC
TGCCTCTTGCGCTTCAAGTTGAAACCCATTTTTCTTCCTGGTAAAACTCTCCATAAATATTGCAAAGCTTCTTGGTTGTGCCCGAAGAGAGAACAAAGAT
TAGAATGCGTCGTTGTTGTGCCTTCTTTTAAAAGCAATTTGTGTTCATTTCAATTCCTTTCTTTTAAAAGCAATTTTTGCCCAAAGAGAGAACAGTCTTG
GAAAGATTAA
AA sequence
>Potri.006G128550.1 pacid=42768778 polypeptide=Potri.006G128550.1.p locus=Potri.006G128550 ID=Potri.006G128550.1.v4.1 annot-version=v4.1
MQCFLMTESHTLFPSKYTLKVSKLKAFQLLRTLFYTPKWSQQPIDDIFEQSWSKQSPCNGPPCTLMRTRGKIEDAQKSRLKQSRKESIELIYKFEVSKRC
CLLRFKLKPIFLPGKTLHKYCKASWLCPKREQRLECVVVVPSFKSNLCSFQFLSFKSNFCPKREQSWKD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G128550
[exp]
0 1
AT3G13850 AS2 LBD22 LOB domain-containing protein ... Potri.018G052700
[exp]
11.22 0.9255
Potri.007G032600
[exp]
20.04 0.9238
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Potri.002G223200
[exp]
27.82 0.9158
AT2G42990 GDSL-like Lipase/Acylhydrolase... Potri.002G219700
[exp]
35.77 0.9143
AT5G51810 AT2353, GA20OX2... gibberellin 20 oxidase 2 (.1) Potri.007G103800
[exp]
39.64 0.9139 GA20ox5
AT1G75900 EXL3 GDSL-like Lipase/Acylhydrolase... Potri.005G242800
[exp]
43.31 0.9137
AT4G00165 Bifunctional inhibitor/lipid-t... Potri.014G059800
[exp]
45.95 0.9133
AT4G38770 ATPRP4, PRP4 ARABIDOPSIS THALIANA PROLINE-R... Potri.009G129900
[exp]
48.55 0.9129 PRP4.4
AT2G18420 Gibberellin-regulated family p... Potri.013G113400
[exp]
53.78 0.9127
AT3G60130 BGLU16 beta glucosidase 16 (.1.2.3) Potri.001G225808
[exp]
57.34 0.9127

Potri.006G128550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.