Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20890 905 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 286 / 8e-90 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 285 / 1e-89 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G18190 271 / 1e-84 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 250 / 2e-76 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G02530 199 / 4e-57 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 197 / 3e-56 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 187 / 1e-52 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 166 / 9e-45 TCP-1/cpn60 chaperonin family protein (.1) AT2G33210 74 / 7e-14 HSP60-2 heat shock protein 60-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341100 [exp] 988 / 0 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 299 / 7e-95 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 291 / 1e-91 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 275 / 2e-85 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.012G051300 [exp] 271 / 1e-84 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 271 / 2e-84 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 269 / 2e-83 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.010G051700 [exp] 255 / 2e-78 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 254 / 1e-77 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032176 [exp] 950 / 0 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 949 / 0 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 914 / 0 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10028007 [exp] 659 / 0 AT5G20890 752 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 288 / 2e-90 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 281 / 4e-88 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032467 [exp] 274 / 2e-85 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 270 / 1e-83 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10008670 [exp] 263 / 4e-81 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10026773 [exp] 258 / 2e-79 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.006G128600.6 pacid=42769269 polypeptide=Potri.006G128600.6.p locus=Potri.006G128600 ID=Potri.006G128600.6.v4.1 annot-version=v4.1 ATGGCGGTTGAGAAAATTTTCAAAAGTGAAGCTACTGAAGAAAAAGGAGAGCGTGCCAGATTGGCATCGCTTATTGGTGGTATGGCTGTTGCTGACTTGG TCAAGACAACTCTGGGGCCAAAAGGAATGGATAAAATCTTACAGTCGACAGGCAGAGGTCATGAAGTCACAGTAACAAACGATGGGGCCACCATCCTCAA GTCCCTTCACATTGACAACCCAGCTGCTAAAATCCTTGTTGATATCTCTAAAGTTCAAGATGATGAAGTTGGTGATGGAACAACTTCTGTTGTTGTTTTG GCGGGGGAACTCTTGAGGGAGGCAGAAAAGCTGTTGGCAGCAAAAATTCACCCGATGACAATAATAGCAGGTTTCCGAATGGCAGCAGAATGTGCTCGCA ATGCTTTGTTGCAAAAGGTTTTGGATAACAAAGACAATGAAGAAAAATTCATGGCTGACTTGATGAAGATTGCAAGGACTACTTTGAGTTCCAAAATACT ATCACAGGATAAGGAATACTTTGCAAAACTGGCTGTTGATGCAGTTATGAGATTACAGGGTAGCACAAACTTAGAGGCTATTCAAATTATCAAGACGCCT GGAGGTTCACTAAAGGATTCCTTCTTAGATGAAGGATTTATTCTTGACAAGAAAATCGGTGTTGGACAACCAAAGCGAATAGAGAATGCAAAGATTTTGG TGGCCAATACTGCAATGGATACAGACAAAGTAAAAATCTACGGGGCACGTGTTCGTGTCGATTCAATGTCCAGGGTTGCTGAAATTGAAGCAGCTGAGAA GCAAAAAATGAAAGAAAAGGTGGATAAGATAATAGCACATGGAATTAACTGCTTCATTAACAGACAACTGATTTACAATTTCCCTGAAGAACTCTTTGCA AATGCTGGAATTCTTGCAATTGAGCATGCTGATTTTGATGGAATTGAACGTCTTGCTTTAGTGACTGGTGGTGAAATTGCTTCAACATTTGATAATCCAG AGTCAGTTAAGCTTGGTCACTGCAAGCTTATTGAGGAAATTATGATTGGTGAGGACAAGTTGATTCACTTTTCAGGTGTTGAAATGGGTCAGGCATGTAC TATAGTACTGAGAGGTGCAAGCCGTCATGTGCTTGATGAGGCGGAAAGGTCCCTGCATGATGCCTTGTGTGTGCTGTCTCAGACAGTCAACGACAGCAGG GTTCTACTTGGAGGTGGATGGCCTGAGATGGTGATGGCAAAGGAAGTCGATGAATTAGCTCGAGTGACTCCTGGGAAGAAGTCCCATGCTATTGAAGCAT TCTCAAGGGCTCTCATTGCAATTCCTACTATCATTGCAGAAAATGCTGGTTTGGACAGTGCAGAGTTGGTTGCACAGCTTCGGGCAGAGCACCACAAGGA GGGGTGCACATCAGGAATTGATGTGATATCTGGATCTATAGGAGATATGGTAGAGCTAGGCATTTCTGAAGCATTCAAAGTTAAGCATGCTGTGCTGCTC TCTGCAACTGAAGCTGCTGAGATGATCCTTAGAGTGGATGAAATCATCACTTGTGCTCCACGCAGGAGAGAAGATAGAATGTGA
AA sequence Show only first row Show all	>Potri.006G128600.6 pacid=42769269 polypeptide=Potri.006G128600.6.p locus=Potri.006G128600 ID=Potri.006G128600.6.v4.1 annot-version=v4.1 MAVEKIFKSEATEEKGERARLASLIGGMAVADLVKTTLGPKGMDKILQSTGRGHEVTVTNDGATILKSLHIDNPAAKILVDISKVQDDEVGDGTTSVVVL AGELLREAEKLLAAKIHPMTIIAGFRMAAECARNALLQKVLDNKDNEEKFMADLMKIARTTLSSKILSQDKEYFAKLAVDAVMRLQGSTNLEAIQIIKTP GGSLKDSFLDEGFILDKKIGVGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSRVAEIEAAEKQKMKEKVDKIIAHGINCFINRQLIYNFPEELFA NAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASRHVLDEAERSLHDALCVLSQTVNDSR VLLGGGWPEMVMAKEVDELARVTPGKKSHAIEAFSRALIAIPTIIAENAGLDSAELVAQLRAEHHKEGCTSGIDVISGSIGDMVELGISEAFKVKHAVLL SATEAAEMILRVDEIITCAPRRREDRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20890			TCP-1/cpn60 chaperonin family ...		Potri.006G128600 [exp]	0	1
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.009G061700 [exp]	1.00	0.9607	HF.2
AT1G70780			unknown protein		Potri.010G110800 [exp]	3.46	0.9322
AT1G23100			GroES-like family protein (.1)		Potri.010G111600 [exp]	3.74	0.9264
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Potri.007G005000 [exp]	3.87	0.9451	SMH905
AT5G63830			HIT-type Zinc finger family pr...		Potri.001G085800 [exp]	5.83	0.9487
AT3G29310			calmodulin-binding protein-rel...		Potri.004G124301 [exp]	7.54	0.9107
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	12.68	0.8830	Pt-CYCB2.2
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.016G035800 [exp]	12.72	0.8829
AT1G30070			SGS domain-containing protein ...		Potri.011G085100 [exp]	20.34	0.9297
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Potri.008G103800 [exp]	20.73	0.8647

Compare expression of checked genes

Potri.006G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.