Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09770 379 / 9e-131 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 344 / 2e-118 RING/U-box superfamily protein (.1) AT5G03200 326 / 2e-110 RING/U-box superfamily protein (.1) AT5G19080 261 / 1e-84 RING/U-box superfamily protein (.1) AT3G06140 248 / 7e-80 RING/U-box superfamily protein (.1) AT2G21380 49 / 4e-06 Kinesin motor family protein (.1) AT1G59560 48 / 4e-06 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT4G24204 46 / 4e-06 RING/U-box superfamily protein (.1.2.3) AT3G23280 48 / 6e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT1G30860 48 / 8e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G089000 [exp] 462 / 5e-164 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.008G202700 [exp] 282 / 8e-93 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 276 / 5e-90 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 270 / 2e-87 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 263 / 8e-85 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.005G225300 [exp] 52 / 5e-07 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.001G074800 [exp] 50 / 1e-06 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.016G116300 [exp] 49 / 2e-06 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.006G100400 [exp] 48 / 7e-06 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023182 [exp] 443 / 2e-157 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10015080 [exp] 434 / 1e-152 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 352 / 9e-121 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 352 / 1e-120 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10034030 [exp] 283 / 5e-93 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10004419 [exp] 279 / 2e-91 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10000533 [exp] 51 / 8e-07 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10041246 [exp] 50 / 2e-06 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10010392 [exp] 48 / 3e-06 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10002487 [exp] 48 / 8e-06 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.006G128700.1 pacid=42768906 polypeptide=Potri.006G128700.1.p locus=Potri.006G128700 ID=Potri.006G128700.1.v4.1 annot-version=v4.1 ATGGGCAACATCAGCAGCAGAAACAACGTTAACAGCAGGCGGAGCCTCGGCAGCCGGCGGAGCCACCCTCCACCTCCACCGCCAGCACCCCCACAGCCTG AAATCACGGCCAACCGTTACGTTTTCGCCGCGGCAACACCTTACCCTTCGCAATACCCAAACCCTAACCCTCCACAATACTACCAGCACCCTGGCTACTA TCCAGCCCAGCCAACAGCGATGCCTGTGCCTTTGCCAGCTCCGTATGATCATCACCACCGGGTGGACCATCCGGCGGCTCATTGGGTGAGTGGGAGGTGC CCAATGATGCCCCAACCGGCGCCTTATGTGGAGCACCAGAAGGCGGTTACTATAAGGAATGATGTTAATTTGAAGAAGGAGAGTTTGAGGATTGAACCGG ACGAGGAGAATCCAGGGAGCTATCTTGTTACATTCACGTTTGATGCTACTGTTGCTGGAAGCATCACTATTATTTTCTTTGCAAAAGAAGGTGAGGATTG TATCCTGACACCAACGAAGGCATACCTCCTTCCACCAGTAACAGTTAATTTCCAACAAGGTCTGGGCCAGAAGTTCAGACAGCCTTCTGGGACAGGGATT GATTTCACCTTGTTTGAGGAGAAAGAGTTGGTAAAAGAGGGTGAGATGGATGCCTATCCTCTAGCAGTAAAAGCAGAGGCATCCCCTGCTAATCGAAAGG GAACAGAAGGAAACCAAATGTCTGGAGCTACGAACTCTCAGATAACACATGCAGTGTTTGAGAAGGAGAAAGGTGAGTACCAAGTAAGGGTGATGAAGCA GATCCTCTGGGTGAATGGGATAAGATATGAGCTTCAGGAGATATACGGGATTGGAGATTCTGTTGATGGTGATGTTGATGCAAATGACCCAGGTAAAGAA TGTGTCATTTGCCTGTCAGAACCACGGGACACTACCGTTCTTCCTTGCCGACACATGTGTATGTGCAGTGGATGTGCAAAGGTTTTGAGGTTCCAAACGA ACAGATGCCCCATCTGCAGGCAACCAGTTGACAGGCTTCTAGAGATAAAGGTCAACAATGGGCCTGATGAATGA
AA sequence Show only first row Show all	>Potri.006G128700.1 pacid=42768906 polypeptide=Potri.006G128700.1.p locus=Potri.006G128700 ID=Potri.006G128700.1.v4.1 annot-version=v4.1 MGNISSRNNVNSRRSLGSRRSHPPPPPPAPPQPEITANRYVFAAATPYPSQYPNPNPPQYYQHPGYYPAQPTAMPVPLPAPYDHHHRVDHPAAHWVSGRC PMMPQPAPYVEHQKAVTIRNDVNLKKESLRIEPDEENPGSYLVTFTFDATVAGSITIIFFAKEGEDCILTPTKAYLLPPVTVNFQQGLGQKFRQPSGTGI DFTLFEEKELVKEGEMDAYPLAVKAEASPANRKGTEGNQMSGATNSQITHAVFEKEKGEYQVRVMKQILWVNGIRYELQEIYGIGDSVDGDVDANDPGKE CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIKVNNGPDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.006G128700 [exp]	0	1
AT5G58160			actin binding (.1)		Potri.018G108000 [exp]	3.60	0.7763
AT3G21480			BRCT domain-containing DNA rep...		Potri.010G014700 [exp]	7.61	0.7756
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	15.74	0.7704
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	19.74	0.7361
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.003G075700 [exp]	21.07	0.6945	RAN1.3
AT5G63550			DEK domain-containing chromati...		Potri.012G102500 [exp]	23.74	0.7467
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	24.24	0.7450	NPH4.1
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.007G046200 [exp]	24.39	0.7499	AP2.15,RAP2
AT1G26580			unknown protein		Potri.010G159700 [exp]	32.15	0.7355
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Potri.012G065600 [exp]	35.09	0.7386

Compare expression of checked genes

Potri.006G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.