Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09760 380 / 1e-127 RING/U-box superfamily protein (.1) AT5G60580 360 / 8e-120 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 343 / 2e-113 RING/U-box superfamily protein (.1.2) AT3G06330 189 / 8e-55 RING/U-box superfamily protein (.1.2.3) AT5G18760 173 / 7e-49 RING/U-box superfamily protein (.1) AT5G59000 64 / 2e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 64 / 2e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 59 / 7e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G05830 57 / 4e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 52 / 3e-07 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013300 [exp] 422 / 2e-143 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.016G022900 [exp] 362 / 2e-120 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 349 / 2e-115 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.010G014950 [exp] 216 / 1e-64 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 215 / 2e-64 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 195 / 8e-57 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.010G195100 [exp] 62 / 6e-11 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 60 / 2e-10 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 60 / 5e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026501 [exp] 459 / 1e-157 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10019931 [exp] 417 / 3e-141 AT3G09760 360 / 2e-119 RING/U-box superfamily protein (.1) Lus10037410 [exp] 389 / 2e-130 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 370 / 9e-124 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 367 / 1e-122 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 387 / 9e-122 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10012791 [exp] 212 / 4e-63 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 211 / 5e-60 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 185 / 5e-53 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 140 / 2e-38 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.006G129000.2 pacid=42770139 polypeptide=Potri.006G129000.2.p locus=Potri.006G129000 ID=Potri.006G129000.2.v4.1 annot-version=v4.1 ATGGGAAATGAAGAAGTCTCACCCACCAAAGAAGGAGAAAATTTCAGTAACCCAGATGATCCTCCAATTCCAAAGGTTGGGAGATCCACAGAAATAACTG AGGATAATCCAGAGGGACAGCACCAGAGGCACCGAGAGCTCAGCTTAGAGATACAATCAAACAGTCTAGAGGATGCAAGATTTGATTTTGTGACAATTCA AACGCCCCCAATACCAAGTTCCACCCCCAAAAGAGTAATTTTTTCACCAATGCCGAGCCCTAGTTTTGCCCAAATGAATGAGCCCCCTGATCCCTTGTCA TCAAAAATCAAATCAAACATAAGAAGTTTACTTCCAAAGTTAAGTTTTAAATATCGGAATAGTACTTTGGATATTGAGAAGGCTGCCGCCATGCTTGCAC AGGGAGGTTCATCAGAAACAACAAAGCAGAAGCCATTCATTTCCAGGACATTGTCTCTCACAAAGCTTTTTACACTCCGGACAACGAGAACATCATCCTT ACCCGTTACCCCTATTGCTCACTCAAATCCGGAGTCTATGCATGGAGGAAGTATGATTAATCCACCTAGTTCTGTTAAAAGGCCCATTCATCGATCACAC TCTGTCCCTGATTTTAGAAAAGATGGAAGCATAAGGAAGTTGGATTCTTTAGGTGGCCTGTTTCGTGTGGTTCCAAGTACTCCAAGAGTGGCTGAGGAGG CTGTCTCAATAATGACAACATCTAATGCATCACCCAGGAATGATACTGATGGAAATGATGATGGTGGAGAAGATATTCCCGAAGAAGAAGCTGTTTGCAG AATCTGCTTGATTGTACTGGGGGAAGGTTCTGACACCCTAAAGATGGAATGCAGCTGTAAGGGTGAACTTGCATTGGCGCACCAAGAATGTGCTGTAAAA TGGTTTAGTGTTAAAGGTAATAGAACATGTGAGGTGTGCAAGCAGGATGTTTTGAATCTACCAGTTACCCTTCTCCGAGTTCAAAATTCTCAGGCCGTTG GTTCTCAAGGTCAAACTCAGCATTCGGAGGTTCCTCAACACAGGGTTTGGCAGGATGTTCCTGTTCTTGTCATTGTCAGCATGCTTGCCTACTTTTGTTT TCTTGAGCAGCTTCTGGTTGGGAAAATGGGGTCTGGTGCAATTGCCGTTTCTCTTCCCTTTTCCTGCATATTGGGCCTGCTTGCTTCCATGACTTCAACA ACAATGGTGAGGAGAAGGTATGTCTGGGTCTATGCAACTATTCAGTTTGGATTAGTGGTCCTTCCTGCTCACCTCCTCTATTCATTGCTTCATATACAGG CTGTTCTATGTGTTCTCCTTGCCACATTTACTGGTTTTGGAGCTACGATGTTCGGAAAGTATGTTATAGTTGAGATCATGAGATGGAGGAGAAGATGGAT TGATCAGCCAAATGAACAGCGTGGTTCTCAGGATTTGGCACAACCACATCAACAGCCTACAGTGGTTGATGAAACTGTGACAAATCCGAACCATCTACCC AGCTGA
AA sequence Show only first row Show all	>Potri.006G129000.2 pacid=42770139 polypeptide=Potri.006G129000.2.p locus=Potri.006G129000 ID=Potri.006G129000.2.v4.1 annot-version=v4.1 MGNEEVSPTKEGENFSNPDDPPIPKVGRSTEITEDNPEGQHQRHRELSLEIQSNSLEDARFDFVTIQTPPIPSSTPKRVIFSPMPSPSFAQMNEPPDPLS SKIKSNIRSLLPKLSFKYRNSTLDIEKAAAMLAQGGSSETTKQKPFISRTLSLTKLFTLRTTRTSSLPVTPIAHSNPESMHGGSMINPPSSVKRPIHRSH SVPDFRKDGSIRKLDSLGGLFRVVPSTPRVAEEAVSIMTTSNASPRNDTDGNDDGGEDIPEEEAVCRICLIVLGEGSDTLKMECSCKGELALAHQECAVK WFSVKGNRTCEVCKQDVLNLPVTLLRVQNSQAVGSQGQTQHSEVPQHRVWQDVPVLVIVSMLAYFCFLEQLLVGKMGSGAIAVSLPFSCILGLLASMTST TMVRRRYVWVYATIQFGLVVLPAHLLYSLLHIQAVLCVLLATFTGFGATMFGKYVIVEIMRWRRRWIDQPNEQRGSQDLAQPHQQPTVVDETVTNPNHLP S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09760			RING/U-box superfamily protein...		Potri.006G129000 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	3.74	0.7768
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	7.54	0.7314
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	7.93	0.7083
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	8.36	0.7402
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	12.64	0.7309	CYP71.3
AT2G32970			unknown protein		Potri.014G158200 [exp]	14.49	0.7018
AT5G20170			RNA polymerase II transcriptio...		Potri.015G057100 [exp]	15.87	0.7036
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.016G064600 [exp]	16.58	0.7081
AT4G19670			RING/U-box superfamily protein...		Potri.012G119000 [exp]	18.49	0.7136
AT5G59020			Protein of unknown function (D...		Potri.001G246200 [exp]	19.77	0.6875

Compare expression of checked genes

Potri.006G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.