Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37160 812 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G53390 804 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 54 / 2e-07 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 49 / 6e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 47 / 4e-05 TAF5 TBP-associated factor 5 (.1) AT4G15900 46 / 4e-05 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 45 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT4G05410 45 / 0.0001 YAO YAOZHE, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 45 / 0.0001 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G73720 44 / 0.0003 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088800 [exp] 929 / 0 AT3G53390 813 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 53 / 3e-07 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 51 / 2e-06 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.005G148500 [exp] 49 / 7e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G107900 [exp] 49 / 7e-06 AT4G21130 505 / 2e-176 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 48 / 1e-05 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G061000 [exp] 47 / 2e-05 AT4G21130 513 / 9e-180 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 45 / 8e-05 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.019G096900 [exp] 43 / 0.0003 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019930 [exp] 765 / 0 AT3G53390 794 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10026500 [exp] 761 / 0 AT3G53390 785 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000150 [exp] 459 / 4e-161 AT3G53390 434 / 3e-151 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 52 / 6e-07 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10039597 [exp] 52 / 8e-07 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10008853 [exp] 52 / 1e-06 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10023255 [exp] 51 / 2e-06 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 49 / 1e-05 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 49 / 1e-05 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 47 / 2e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G129100.2 pacid=42769915 polypeptide=Potri.006G129100.2.p locus=Potri.006G129100 ID=Potri.006G129100.2.v4.1 annot-version=v4.1 ATGATCAACACAAGCAACGGCATGATCTCAACGTCATCTACATCGGCGAACCCGCAATCACCGGGATTAAAGACTTATTTTAAAACCCCAGAAGGACGTT ATAAGCTTCACTATGAAAAGACACATCCTTCTGGTCTACTTCACTATGCCCATGGCAAAACTGCTACCCAGGTAACCCTAGCTAATCTCAAGGACAAGCC TGCCCCATCAACCCCGACAGCCCCACCTTCAAGTTTCAGTGCGAGCAGTGGTGTACGATCAGCTGCTGCTAGGTTGTTGGGTGGTAGCAATGGAAGCCGT GCACTTAGCTTTGTTGGAGGGAATGGTGGGAATAAAAGTATTAGTAGTAGTAGTAGTAGGATTGGATCATTGGGGGCTTCGAGCTCAAGTAATTCAATGA TTAATACAAATTTTGATGGAAAAGGGACTTACTTGATCTTCAATGTAGGGGATGCCATCTTCATAAGTGATTTAAATTCTCCAGATAAGGACCCAATAAA ATCCATCCATTTTAGTAATTCAAACCCTGTGTGCCATGCCTTTGACCAAGATGCTAAGGATGGACATGATTTTCTTGTTGGCTTGAGTTCTGGTGATGTC TACTCTGTGTCACTGAGACAGCAATTACAGGATGTTGGAAAGAAGCTAGTTGGGGCCCAGCATTATAACAAAGATGGTTCAGTTAATAACAGCCGTTGTA TGAGTATTGCATGGGTGCCTGGAGGAGATGGTGCTTTTGTTGTTGCTCATGCTGATGGTAATTTGTACGTCTATGAAAAGAGCAAGGATGGTGCTGGTGA TTCTTCATTCCCTGTTATCAAAGATCAAACTCAATTCTCTGTTTCGCATGCCCGGTACAGTAAGAGTAACCCAATTGCCAGGTGGCATGTCAGCCAAGGT TCAATAAATGGCATTGCTTTCTCAACCGACGGGACCTATTTAGCAACTGTTGGAAGAGATGGTTACTTGCGAGTTTTTGACTATTTAAAAGAACAACTTA TATGTGGTGGGAAAAGTTATTATGGTGCCCTTCTTTGTTGTGCTTGGAGCATGGATGTGAAGTATATTTTGACTGGAGGAGAAGATGATTTAGTTCAAGT CTGGAGCATGGAAGATCGGAAAGTTGTTGCTTGGGGTGAAGGACACAGTTCATGGGTGAGCGGAGTGGCTTTTGATTCATATTGGTCATCACCAAATTCA GATGGCACAGGGGAGAATGTTGTGTACCGGTTTGGTTCTGTTGGTCAGGACACACAGTTGCTTCTATGGGACCTGGAAATGGATGAAATTGTAGTGCCAT TACGCAGGTGCCCTCCTGGTGGATCTCCTACTTTCAGTACTGGAAGTCAGTCTTCACACTGGGACAGTGTTATCCCAGTTGGTACTCTGCAACCTGCTCC AAGCATGCGTGATGTTCCAAAGCTTTCTCCTGTATTAGCTCACCGTGTTCACACAGAACCTCTTTCTGGTTTAGTATTTAGACAGGAATCTGTTCTTACT GTATGTAGAGAGGGCCATATAAAAATCTGGATGAGACCTGGAACCTCAGAAAGCCAGTCAGGCAACTCTGAAACCATCTTAAGTACCAGTTTGAAGGAGA AGCCATTATTGTCAAGCAAGACTGGCAGTTCTGCATATAAGCAATGA
AA sequence Show only first row Show all	>Potri.006G129100.2 pacid=42769915 polypeptide=Potri.006G129100.2.p locus=Potri.006G129100 ID=Potri.006G129100.2.v4.1 annot-version=v4.1 MINTSNGMISTSSTSANPQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTATQVTLANLKDKPAPSTPTAPPSSFSASSGVRSAAARLLGGSNGSR ALSFVGGNGGNKSISSSSSRIGSLGASSSSNSMINTNFDGKGTYLIFNVGDAIFISDLNSPDKDPIKSIHFSNSNPVCHAFDQDAKDGHDFLVGLSSGDV YSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCMSIAWVPGGDGAFVVAHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVSHARYSKSNPIARWHVSQG SINGIAFSTDGTYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDVKYILTGGEDDLVQVWSMEDRKVVAWGEGHSSWVSGVAFDSYWSSPNS DGTGENVVYRFGSVGQDTQLLLWDLEMDEIVVPLRRCPPGGSPTFSTGSQSSHWDSVIPVGTLQPAPSMRDVPKLSPVLAHRVHTEPLSGLVFRQESVLT VCREGHIKIWMRPGTSESQSGNSETILSTSLKEKPLLSSKTGSSAYKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37160			Transducin/WD40 repeat-like su...		Potri.006G129100 [exp]	0	1
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.006G132300 [exp]	4.89	0.7929
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.001G276800 [exp]	5.29	0.7769
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	8.12	0.7304	Pt-CUL1.3
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	8.24	0.8051
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	9.79	0.7663
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.002G103300 [exp]	15.23	0.7765
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.006G039500 [exp]	15.49	0.7479
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	18.24	0.7750	NPH4.1
AT5G63200			tetratricopeptide repeat (TPR)...		Potri.012G092000 [exp]	19.59	0.7317
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.007G046200 [exp]	19.59	0.7773	AP2.15,RAP2

Compare expression of checked genes

Potri.006G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.