Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SYP71.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09740 377 / 2e-133 ATSYP71, SYP71 syntaxin of plants 71 (.1) AT3G61450 318 / 8e-110 ATSYP73, SYP73 syntaxin of plants 73 (.1.2) AT3G45280 304 / 2e-104 ATSYP72, SYP72 syntaxin of plants 72 (.1) AT5G61210 44 / 5e-05 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT1G13890 42 / 0.0001 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088200 [exp] 456 / 1e-164 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.014G087400 [exp] 355 / 1e-124 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1) Potri.012G066700 [exp] 48 / 2e-06 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.015G049000 [exp] 45 / 3e-05 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.010G160350 [exp] 44 / 5e-05 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019925 [exp] 416 / 3e-148 AT3G09740 419 / 2e-149 syntaxin of plants 71 (.1) Lus10023178 [exp] 412 / 3e-147 AT3G09740 416 / 1e-148 syntaxin of plants 71 (.1) Lus10026495 [exp] 405 / 4e-144 AT3G09740 408 / 5e-145 syntaxin of plants 71 (.1) Lus10015075 [exp] 402 / 3e-143 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10036118 [exp] 322 / 2e-111 AT3G45280 363 / 3e-127 syntaxin of plants 72 (.1) Lus10036377 [exp] 330 / 3e-110 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10014759 [exp] 295 / 8e-97 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10026653 [exp] 51 / 2e-07 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10004660 [exp] 51 / 3e-07 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10037092 [exp] 50 / 7e-07 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Potri.006G129500.1 pacid=42769725 polypeptide=Potri.006G129500.1.p locus=Potri.006G129500 ID=Potri.006G129500.1.v4.1 annot-version=v4.1 ATGAGCGTGATTGACATCTTAACTCGCGTAGACGCGATCTGCAACAAATACGACAAATACGACGTCGAGAAGCAAAAAGATCTCAATGTCTCCGGCGACG ACGCCTTCGCTCGCCTCTACGCCGCCGTCGATGCTGACATTGAAGCCGCTCTTCAGAAAGCAGAGCTTGCGTCCAAGGAGAAAAGTAAGGCCTCTGCTGT TGCAATAAACGCAGAGCTTCGTCGAACTAAAGCTAGATTGCTTGAGGAAGTCCCTAAGTTGCAGAGGTTAGCAATAAAGAAGGTTAAAGGGCTCTCTATA GAAGAACTTGCTGCACGAAATGATTTGGTCCATGCATTGCCAGATAGGATTCAAGCTATACCAGATGGAAGTTCAGCTGCACTCAAACAAACTGGAGGTT GGGGGTCTTCGGCTCCCCGAACCGAAATCAAATTTGATTCAGATGGGCAGTTTGATAATGAATACTTTCAAGAAAGTGAGACATCTAGTCAATTCAGGCA GGAGTATGAAATGCGTAAAATGAAGCAGGATCAAGGTTTGAGTATGATTTCAGAAGGTTTGGACACTCTGAAGAATATGGCTCATGACATGAATGAGGAG TTGGACAGGCAAGTTCCTTTGATGGATGAAATTGACACTAAGGTGGACAAGGCAGCTGCTGACCTTAAGAATACCAATGTTAGACTTAAAGACACTGTTA ACCAGTTGAGATCTAGTCGGAATTTCTGTATTGATATTGTTTTGTTGATCATAATCCTCGGAATAGCTGCCTACTTGTACAATGTGCTGAAGAAGTGA
AA sequence Show only first row Show all	>Potri.006G129500.1 pacid=42769725 polypeptide=Potri.006G129500.1.p locus=Potri.006G129500 ID=Potri.006G129500.1.v4.1 annot-version=v4.1 MSVIDILTRVDAICNKYDKYDVEKQKDLNVSGDDAFARLYAAVDADIEAALQKAELASKEKSKASAVAINAELRRTKARLLEEVPKLQRLAIKKVKGLSI EELAARNDLVHALPDRIQAIPDGSSAALKQTGGWGSSAPRTEIKFDSDGQFDNEYFQESETSSQFRQEYEMRKMKQDQGLSMISEGLDTLKNMAHDMNEE LDRQVPLMDEIDTKVDKAAADLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.006G129500 [exp]	0	1	Pt-SYP71.3
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	2.00	0.9627
AT5G43460			HR-like lesion-inducing protei...		Potri.010G073500 [exp]	2.00	0.9527
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.015G038800 [exp]	4.79	0.9339
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037500 [exp]	6.00	0.9448
AT5G17190			unknown protein		Potri.010G108000 [exp]	8.94	0.9187
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.004G074500 [exp]	9.48	0.9365
AT4G29340		PRF4	profilin 4 (.1)		Potri.006G235200 [exp]	9.48	0.9411	Pt-PRO1.4
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Potri.019G083800 [exp]	9.79	0.9262	UBC.5
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	9.79	0.9455
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.014G116500 [exp]	10.00	0.9451	Pt-ARF1.1

Compare expression of checked genes

Potri.006G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.