Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42760 65 / 5e-12 unknown protein AT2G31560 44 / 4e-05 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059900 [exp] 97 / 9e-24 AT2G42760 99 / 6e-25 unknown protein Potri.011G069900 [exp] 94 / 1e-22 AT2G42760 89 / 4e-21 unknown protein Potri.001G372800 [exp] 50 / 9e-07 AT3G15115 114 / 5e-29 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019924 [exp] 118 / 2e-31 AT2G42760 56 / 7e-09 unknown protein Lus10005429 [exp] 75 / 9e-16 AT2G42760 111 / 1e-29 unknown protein Lus10007299 [exp] 74 / 2e-15 AT2G42760 115 / 7e-31 unknown protein Lus10015228 [exp] 72 / 2e-14 AT2G42760 115 / 5e-31 unknown protein Lus10026494 [exp] 62 / 5e-12 ND 36 / 0.004 Lus10015227 [exp] 62 / 2e-11 AT2G42760 93 / 1e-22 unknown protein Lus10029248 [exp] 42 / 0.0002 AT2G42760 61 / 6e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G129800.1 pacid=42767432 polypeptide=Potri.006G129800.1.p locus=Potri.006G129800 ID=Potri.006G129800.1.v4.1 annot-version=v4.1 ATGGCAGCTGATCATAGCTATCCACTGTGTCTACTAGGAGTCATGGATCGTCTTTGGTTTCACAAAATCATTTTGTTCTCAGAACCCACTGCTGCTCCAA AAACCCTTAAGCAACCTCAGCTCATGACAACAGAATCTCTTACATGCCCATCGACATCAAGCATCACTTTAGCAACTCCTCCTAATGAAGAATTCTTATC ATCTCCTTCAGTCCCTCTTCTTGAAGACCTGCAAATCTCTCCTGCAGAGTCACCTACAACCACTCCGCTGGATATTGACTCCAGCAACGAGGAGGAGGAG GAGGAGGAGGAAGATAAGGATATTAACCAGAAAGAAAGGCGAATGAGATTGAGTCTTGCACAAAGAAGTACTCGTTCACATTCTTCATCACCATCAACTC AAAAACGTCCCAAATATTTTAGACGTTCAGGCTCGTTGACGATCCTGCCGAAATCCATGAGCTGCAGGAGCTTGGGAGAGTTAGAACTTGAAGAAGTTAA AGGGTTCATGGATCTTGGTTTCATATTCAAAAAAGAATACTTGAGTCCAAGAATGATGAGTGTTGTCCCTGGATTGCAAAGACTTGGACTGTACCAAAAT AGACAGAACATAAATCTCAGAGACAGTAAAGAAGCTGAAGATCATGATGAACTAATTAGAAAACAAGAGGAGGACGAAGAGAAAGGTATTATTAGACCAT ATCTATCAGAATCTTGGCTAATAAAGAGACCCGATTCACCGTTATTAAATCTAAGGGTGCCAAGAGTATCTGTAGCTGCTGACATGAAAATACACCTGAA GTTCTGGGCCAGAACTGTTGCATCTGAAATTCAGCCAGAATCTTGA
AA sequence Show only first row Show all	>Potri.006G129800.1 pacid=42767432 polypeptide=Potri.006G129800.1.p locus=Potri.006G129800 ID=Potri.006G129800.1.v4.1 annot-version=v4.1 MAADHSYPLCLLGVMDRLWFHKIILFSEPTAAPKTLKQPQLMTTESLTCPSTSSITLATPPNEEFLSSPSVPLLEDLQISPAESPTTTPLDIDSSNEEEE EEEEDKDINQKERRMRLSLAQRSTRSHSSSPSTQKRPKYFRRSGSLTILPKSMSCRSLGELELEEVKGFMDLGFIFKKEYLSPRMMSVVPGLQRLGLYQN RQNINLRDSKEAEDHDELIRKQEEDEEKGIIRPYLSESWLIKRPDSPLLNLRVPRVSVAADMKIHLKFWARTVASEIQPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42760			unknown protein		Potri.006G129800 [exp]	0	1
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.001G368000 [exp]	2.23	0.8079
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.002G107700 [exp]	6.32	0.7847
AT1G69600	ZF_HD	ATHB29, ZFHD1, ...	ZINC FINGER HOMEODOMAIN 11, AR...		Potri.010G169400 [exp]	9.79	0.7479
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	9.89	0.7904
					Potri.008G175950 [exp]	10.00	0.7926
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Potri.008G204200 [exp]	10.81	0.7843
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.013G058100 [exp]	12.96	0.7910
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.006G199800 [exp]	13.74	0.8058	Pt-SPP1.1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	13.85	0.8074
AT2G02410			unknown protein		Potri.003G046600 [exp]	21.02	0.7454

Compare expression of checked genes

Potri.006G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.