Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37130 489 / 2e-175 Peroxidase superfamily protein (.1.2) AT4G21960 381 / 9e-133 PRXR1 Peroxidase superfamily protein (.1) AT2G18150 216 / 9e-68 Peroxidase superfamily protein (.1) AT3G50990 215 / 1e-67 Peroxidase superfamily protein (.1) AT5G66390 214 / 3e-67 Peroxidase superfamily protein (.1) AT4G36430 214 / 4e-67 Peroxidase superfamily protein (.1) AT2G18140 213 / 1e-66 Peroxidase superfamily protein (.1) AT3G03670 210 / 6e-66 Peroxidase superfamily protein (.1) AT3G17070 210 / 9e-66 Peroxidase family protein (.1) AT5G17820 208 / 3e-65 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015300 [exp] 395 / 2e-138 AT4G21960 538 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 225 / 1e-71 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 224 / 2e-71 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 210 / 8e-66 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 210 / 1e-65 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.013G066800 [exp] 210 / 2e-65 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 206 / 2e-64 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.006G267400 [exp] 204 / 4e-63 AT2G24800 409 / 1e-143 Peroxidase superfamily protein (.1) Potri.003G156100 [exp] 204 / 2e-62 AT1G30870 352 / 8e-120 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015074 [exp] 520 / 0 AT2G37130 498 / 5e-179 Peroxidase superfamily protein (.1.2) Lus10006778 [exp] 389 / 6e-136 AT4G21960 540 / 0.0 Peroxidase superfamily protein (.1) Lus10020045 [exp] 350 / 9e-121 AT4G21960 490 / 6e-176 Peroxidase superfamily protein (.1) Lus10041784 [exp] 220 / 2e-69 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10004234 [exp] 206 / 3e-64 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 205 / 9e-64 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10034207 [exp] 201 / 2e-62 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10018375 [exp] 196 / 2e-60 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10038393 [exp] 195 / 1e-59 AT1G30870 350 / 7e-120 Peroxidase superfamily protein (.1) Lus10009898 [exp] 194 / 2e-59 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.006G129900.1 pacid=42769626 polypeptide=Potri.006G129900.1.p locus=Potri.006G129900 ID=Potri.006G129900.1.v4.1 annot-version=v4.1 ATGGCAAGTAGTAACATCAGGACGCACTTTTGCAGCTCCACCTTGATCTTTCTTTTATTGCCCTTACTCTTGCAATTTTATTCTGGTAAAAGTGAGCTCC AATTCAATTACTACGCGCAAAGCTGCCCAAGAGCTGAAGAGATCATCAAAGAACAAGTCATTAAGCTGTACAATAAACATGGAAACACAGCTGTTTCATG GGTCAGGAATCTCTTCCATGATTGCATAGTCAAGTCATGCGATGCGTCACTCTTGCTGGAGACCGTGAATGGAATTGAATCAGAGAAAGCATCGCAAAGG AGCCTTGGAATGAGGAATTTTAAGTACGTAAACACCATAAAAGCGGCCCTGGAGAGTGAATGCCCTGTGACAGTCTCTTGTGCTGATATTGTTGCTCTTT CAGCTAGAGACGGCATTGTCATGTTAGGAGGACCGAGGGTCGAGATGAAAACAGGGCGGAGTGACAGCACCGAAAGCTATGGAGCAGTGGTCGAAGACTT CATCCCTAATCACAATGATAGCATTTCGTTGGTACTTTCCCGCTTTCAATCCATTGGCGTTGACGTTGAAGGAACAGTTGCTCTTTTAGGAAGTCACTCT GTTGGCCGAGTTCACTGCGTGAATCTAGTACACAGGATCTACCCTACAGTTGATCCAACTATGGACCCTGATTATGCTGAGTACCTTAAAGGCCGGTGTC CGACCCCAGATCCCGATCCACAGGCAGTTCTATATGCAAGAAATGATCGTGAAACACCAATGATCCTTGATAATTACTACTACAAAAACTTATTGGGCCA CAAGGGACTTCTCATGGTGGATCAACAATTGACTTCTGATCCACTTACGTCTCCATACGTTGAGAAGATGGCTGCTGATAATGGCTACTTCCATGACCAA TTTTCAAGGGCTGTGGTGTTGTTGTCAGAGAACAATCCACTTACTGGTAACCAAGGAGAGATAAGGAAGGATTGCCGCTATGTTAATAGCAATTAG
AA sequence Show only first row Show all	>Potri.006G129900.1 pacid=42769626 polypeptide=Potri.006G129900.1.p locus=Potri.006G129900 ID=Potri.006G129900.1.v4.1 annot-version=v4.1 MASSNIRTHFCSSTLIFLLLPLLLQFYSGKSELQFNYYAQSCPRAEEIIKEQVIKLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLETVNGIESEKASQR SLGMRNFKYVNTIKAALESECPVTVSCADIVALSARDGIVMLGGPRVEMKTGRSDSTESYGAVVEDFIPNHNDSISLVLSRFQSIGVDVEGTVALLGSHS VGRVHCVNLVHRIYPTVDPTMDPDYAEYLKGRCPTPDPDPQAVLYARNDRETPMILDNYYYKNLLGHKGLLMVDQQLTSDPLTSPYVEKMAADNGYFHDQ FSRAVVLLSENNPLTGNQGEIRKDCRYVNSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	0	1
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.015G029400 [exp]	1.41	0.8202
AT3G47510			unknown protein		Potri.015G062300 [exp]	4.00	0.8211
AT2G39510			nodulin MtN21 /EamA-like trans...		Potri.010G209200 [exp]	4.47	0.7756
AT3G60966			RING/U-box superfamily protein...		Potri.014G043200 [exp]	7.21	0.8037
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.001G270000 [exp]	7.74	0.7049
AT1G49470			Family of unknown function (DU...		Potri.009G108900 [exp]	8.30	0.8133
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	9.79	0.7581	Pt-FRD3.1
AT2G41480			Peroxidase superfamily protein...		Potri.018G131600 [exp]	10.19	0.7449
AT1G08920		ESL1	ERD (early response to dehydra...		Potri.005G039900 [exp]	11.74	0.6692
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	15.87	0.6609

Compare expression of checked genes

Potri.006G129900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.