Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53380 865 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 800 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 561 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 374 / 9e-120 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 357 / 1e-113 RLK receptor lectin kinase (.1) AT3G53810 351 / 4e-111 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 347 / 1e-109 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 339 / 1e-106 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 334 / 9e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 330 / 4e-103 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087800 [exp] 1143 / 0 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 561 / 0 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 555 / 0 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.005G189500 [exp] 386 / 2e-124 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 372 / 2e-119 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 367 / 1e-116 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 363 / 1e-115 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 356 / 3e-114 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 354 / 3e-112 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019923 [exp] 937 / 0 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 902 / 0 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 545 / 1e-172 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 385 / 7e-124 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 364 / 4e-116 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 358 / 1e-113 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 352 / 2e-111 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 352 / 3e-111 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 350 / 1e-110 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 348 / 1e-109 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G130000.2 pacid=42770403 polypeptide=Potri.006G130000.2.p locus=Potri.006G130000 ID=Potri.006G130000.2.v4.1 annot-version=v4.1 ATGTCTCTCTCTCACAAAACTTCGCACATTGTTCCTTCACCAATTGTCCTGTTTCTCCTCCTCTGTTTAGTACTACTAAGAACCAAAGCATCATCAACTG ATTTTGACTTCGGTACTTTAACTCTTAGCAGTCTTAAACTCCTCGGCGACGCTCACTTAAACAATGGCAGCGTCCGTCTCACTCGTGACCTGGCCGTCCC GAATTCGGGCGCCGGCAAAGTTCTCTACTCTAAACCCATCAGATTCCGACAACCATCCGCTCACTCCATCGCTAGCTTCTCCACTTTCTTCTCCTTTTCT GTTACTAATCTAAACCCTTCCTCCATCGGCGGTGGCCTAGCTTTTGTCCTCTCTCCGGACTCCGACGCCCTCGGCGCTGCCGGCGGCTTCCTTGGACTCC TCAACGTCGACGATGGGCCTGAGGCTGCTTCCAGTTTTGTGGCGGTCGAGTTTGATACTTTAATGGACGTGGAGTTTAAAGATATTAATGGGAACCATGT GGGTTTGGATCTTAATAGTATGGTTTCGACACAAATAGGTGATTTAGGAGCTATTAATATTGATCTAAAAAGTGGTGATCTTGTTAATGCTTGGATCGAT TATGATGGTACTAATCAAAGCTTCAACATTTCTGTTTCCTACTCAAATCTTAAGCCCAAAGAACCAATTTTGTCTTTTAGTCTTGATTTAGACCAGTATG TTAATGATTTTATGTATGTTGGGTTTTCTGGGTCTACACAAGGAAGTACAGAGATTCATAGTATTGAATGGTGGAGTTTTAGTTCTTCTTTTCAGTCAAG TTTAGGTTCCGAGTCACCTTCTTCAGTACCTCCACCTCCGACGGCTAGTTTGATGAATCCATCGGCTAGTTCTGTTAAGTCCCCGCCACCAACATTGGCT CCTAGCGGTTTAGAGTCCGTTAGTGGTAAGAGTGACAAGTCTAATTCGTGTCATAATCAACTTTGCAAGCAGGGTGCAGGGGCTGTTGCAGGGGTGGTGA CTGCTAGTGCTTTTTTTGTTATTTTTGCTGGTGTTCTTATCTGGGTTTTCTCTAAAAGATTCAAGCATGTGAAAAAGTCAGTGTCTTTTGCATCAGAGGT TATTAAAATGCCTAAGGAGTTTAGTTACAGAGAGCTTAAATCAGCTACCAAATGCTTCAATGCGAATAGAATTATTGGTCACGGAGCATTTGGGACTGTT TATAAGGGTATATTGCTGGAGACTGGTGAAATTGTGGCAGTGAAGAGGTGTAGTCATAGCAGTCAAGGAAAGAATGAGTTTTTATCTGAATTGTCAATAA TTGGGACTCTAAGGCATCGAAATCTTGTTCGGCTTCAAGGTTGGTGTTATGAGAAAGGAGAAATATTGTTAGTTTATGATTTGATGCCCAATGGGAGTCT TGATAAAGCGTTGTTTGAGGCAAGAACGCCTTTGCCATGGTCACATAGGCGTAAAGTTTTACTTGGTGTTGCTTCTGCTCTAGCTTATTTGCATCAAGAA TGTGAAAACCAGGTGATTCATAGAGATATCAAGACCAGCAATATTATGTTGGATGAGGGGTTTAACGCAAGATTAGGAGATTTTGGTTTGGCAAGGCAAA TTGAACATGATAAATCGCCAGATGCAACAGTAGCTGCGGGTACAATGGGCTATTTAGCTCCCGAGTATCTTTTAACAGGAAGAGCTACTGAGAAAACTGA TGTGTTTAGCTATGGAGCTGTGGTTCTTGAAGTGGCTAGTGGGAGAAGACCCATTGAGAGAGAGACTAGTGGGGTTGGAAAAGTTGCGGTTAATGGGAAT TTGGTGGAATGGGTTTGGAGTTTACACAGAGAAGGGAGATTGCTAATGGCAGCTGATGCTAGACTTGAGGGTCAGTTTGAGGAGAGTGAGATGAGGAGGG TTCTGTTGGTTGGGTTAGCTTGTTCGCACCCAGACCCAATGGCTAGACCCGCTATGAGGGGTGTGGTCCAGATGCTTGTGGGGGAAGCCGAGGTCCCTCT TGTTCCAAGAGCAAAGCCTACATTGAGTTTTAGCACTTCACACCTCCTGTTGAGTTTGCAAGACAGTGTGTCCGACTGTAACGGCCTGATCGCCGTTTCA AGTTCCTCATCAGAAAACAGCTTCATCAGAGGTCATGACCTAGTGTGA
AA sequence Show only first row Show all	>Potri.006G130000.2 pacid=42770403 polypeptide=Potri.006G130000.2.p locus=Potri.006G130000 ID=Potri.006G130000.2.v4.1 annot-version=v4.1 MSLSHKTSHIVPSPIVLFLLLCLVLLRTKASSTDFDFGTLTLSSLKLLGDAHLNNGSVRLTRDLAVPNSGAGKVLYSKPIRFRQPSAHSIASFSTFFSFS VTNLNPSSIGGGLAFVLSPDSDALGAAGGFLGLLNVDDGPEAASSFVAVEFDTLMDVEFKDINGNHVGLDLNSMVSTQIGDLGAINIDLKSGDLVNAWID YDGTNQSFNISVSYSNLKPKEPILSFSLDLDQYVNDFMYVGFSGSTQGSTEIHSIEWWSFSSSFQSSLGSESPSSVPPPPTASLMNPSASSVKSPPPTLA PSGLESVSGKSDKSNSCHNQLCKQGAGAVAGVVTASAFFVIFAGVLIWVFSKRFKHVKKSVSFASEVIKMPKEFSYRELKSATKCFNANRIIGHGAFGTV YKGILLETGEIVAVKRCSHSSQGKNEFLSELSIIGTLRHRNLVRLQGWCYEKGEILLVYDLMPNGSLDKALFEARTPLPWSHRRKVLLGVASALAYLHQE CENQVIHRDIKTSNIMLDEGFNARLGDFGLARQIEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSYGAVVLEVASGRRPIERETSGVGKVAVNGN LVEWVWSLHREGRLLMAADARLEGQFEESEMRRVLLVGLACSHPDPMARPAMRGVVQMLVGEAEVPLVPRAKPTLSFSTSHLLLSLQDSVSDCNGLIAVS SSSSENSFIRGHDLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53380			Concanavalin A-like lectin pro...		Potri.006G130000 [exp]	0	1
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G001000 [exp]	5.38	0.9073
AT4G19110			Protein kinase superfamily pro...		Potri.003G190200 [exp]	9.48	0.8842
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	12.36	0.8991	KOR1.2
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	12.48	0.8935
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	19.54	0.9036
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	22.84	0.8870
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	25.51	0.8856
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	27.01	0.8911
AT3G56750			unknown protein		Potri.016G035600 [exp]	30.74	0.8610
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.011G111500 [exp]	32.49	0.8599

Compare expression of checked genes

Potri.006G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.