Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	S1FA3.1
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087400 [exp] 73 / 1e-18 AT3G09735 41 / 3e-06 S1FA-like DNA-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023177 [exp] 61 / 1e-13 AT2G37120 68 / 1e-16 S1FA-like DNA-binding protein (.1) Lus10015073 [exp] 61 / 1e-13 AT2G37120 68 / 1e-16 S1FA-like DNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04689 [poplar] [flax] S1FA DNA binding protein S1FA
Representative CDS sequence Show only first row Show all	>Potri.006G130200.1 pacid=42769422 polypeptide=Potri.006G130200.1.p locus=Potri.006G130200 ID=Potri.006G130200.1.v4.1 annot-version=v4.1 ATGGAAGACGATTTCGAGTTCTCTAATTCTCCTCCTTCCTTCCAAAACATGGGGGATTTGATCAAGGATGCTGAGCCTAAAGGGTTAAACCCAGGATTGA TAGTGCTGCTGGTTATTGGCGGGTTACTTTTGACATTCCTAATTGGAAATTATGTACTTTATTCGTACGCGCAGAAGACCCTTCCTCCGAGGAAGAAGAA GCCCATCTCGAAGAAGAAGATGAAGAAGGAGAGACTGAAGCAAGGTGTCTCAGCACCAGGAGAGTGA
AA sequence Show only first row Show all	>Potri.006G130200.1 pacid=42769422 polypeptide=Potri.006G130200.1.p locus=Potri.006G130200 ID=Potri.006G130200.1.v4.1 annot-version=v4.1 MEDDFEFSNSPPSFQNMGDLIKDAEPKGLNPGLIVLLVIGGLLLTFLIGNYVLYSYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09735			S1FA-like DNA-binding protein ...		Potri.006G130200 [exp]	0	1	S1FA3.1
AT3G24160		PMP	putative type 1 membrane prote...		Potri.001G049800 [exp]	3.46	0.8525	Pt-PMP.1
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Potri.001G138100 [exp]	5.00	0.8751
AT2G37975			Yos1-like protein (.1)		Potri.008G063000 [exp]	6.63	0.8335
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Potri.006G117600 [exp]	6.78	0.8138
AT1G43580			Sphingomyelin synthetase famil...		Potri.005G193300 [exp]	7.74	0.8544
AT1G69980			unknown protein		Potri.008G191700 [exp]	7.74	0.8271
AT1G08750			Peptidase C13 family (.1.2.3)		Potri.019G014000 [exp]	7.93	0.8166
AT3G61790			Protein with RING/U-box and TR...		Potri.003G198600 [exp]	9.00	0.8034
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	9.89	0.8705
AT5G20165			unknown protein		Potri.008G176801 [exp]	10.58	0.8248

Compare expression of checked genes

Potri.006G130200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.