Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37110 320 / 1e-111 PLAC8 family protein (.1) AT2G40935 67 / 2e-13 PLAC8 family protein (.1.2.3) AT3G18450 63 / 6e-12 PLAC8 family protein (.1) AT3G18460 47 / 4e-06 PLAC8 family protein (.1) AT1G68630 45 / 1e-05 PLAC8 family protein (.1) AT3G18470 44 / 1e-05 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087200 [exp] 403 / 2e-144 AT2G37110 309 / 4e-107 PLAC8 family protein (.1) Potri.006G024900 [exp] 59 / 2e-10 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.002G141600 [exp] 40 / 0.0006 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019922 [exp] 329 / 1e-114 AT2G37110 303 / 3e-104 PLAC8 family protein (.1) Lus10015072 [exp] 328 / 3e-114 AT2G37110 306 / 4e-106 PLAC8 family protein (.1) Lus10023176 [exp] 324 / 1e-112 AT2G37110 299 / 7e-103 PLAC8 family protein (.1) Lus10026492 [exp] 303 / 1e-104 AT2G37110 290 / 3e-99 PLAC8 family protein (.1) Lus10005257 [exp] 58 / 3e-10 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10028184 [exp] 41 / 0.0004 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Potri.006G130300.1 pacid=42767188 polypeptide=Potri.006G130300.1.p locus=Potri.006G130300 ID=Potri.006G130300.1.v4.1 annot-version=v4.1 ATGGCTGACAACAGCAAACCAAGCTTCGACAGAAACAATAATGATGGCGAGGAAGCGAGCCCTCTTTTGAACAAGAACCTTGAAGAACAAAACGACAAGA AACCCACCAAGGTTTCTCCTGATGCAAAGACGGCCACCGCCTCCCCGGGATCTGCTTCGCCTGAATATGGGTGGGCCGTGAATGGGCTGCCGTTGAGTCA TGGGAGCGTGGTGGGTGAGCCTATGGGTCGGAATCAGTGGGACTCCAGCCTTTTTGCTTGCCTTGGTCGCAACGATGAATTCTGTAGCAGCGATCTTGAA GTCTGTCTTCTTGGAAGCACTGTCCCTTGCATGCTGTACGGAAGCAATGTAGAGAGACTTGGATCTGCTCCCGGAACATTTGCATCCCACTGCTTGTCAT ACTGTGGTCTGTACCTGATCGGCACTTCATTTTTCGGTAGGAATTGCATTGCACCATGGTTTTCATATTCTAGCCGTACAGCTATCCGTCGGAAGTTTAA CCTAGAGGGTAGCTGTGAGGCACTTGATAGGTCATGTGGGTGCTGTGGGAGCTTTGTGGAAGATGATTTGCAACGTGAGCAATGTGAGACAGCATGTGAT TTTGCAACTCATGTTTTCTGCCACCCATTAGCCCTTTGCCAGGAAGGTCGTGAGATCCGTCGTTGGGTGCCCCATCCTGGGTTCAATGCTCAACCGGTCT TGGTTATGATCCCACCTGGGGAGCAATCCATGGGCCGTGGAGCCTGA
AA sequence Show only first row Show all	>Potri.006G130300.1 pacid=42767188 polypeptide=Potri.006G130300.1.p locus=Potri.006G130300 ID=Potri.006G130300.1.v4.1 annot-version=v4.1 MADNSKPSFDRNNNDGEEASPLLNKNLEEQNDKKPTKVSPDAKTATASPGSASPEYGWAVNGLPLSHGSVVGEPMGRNQWDSSLFACLGRNDEFCSSDLE VCLLGSTVPCMLYGSNVERLGSAPGTFASHCLSYCGLYLIGTSFFGRNCIAPWFSYSSRTAIRRKFNLEGSCEALDRSCGCCGSFVEDDLQREQCETACD FATHVFCHPLALCQEGREIRRWVPHPGFNAQPVLVMIPPGEQSMGRGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37110			PLAC8 family protein (.1)		Potri.006G130300 [exp]	0	1
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Potri.001G114300 [exp]	7.68	0.7101
AT3G56460			GroES-like zinc-binding alcoho...		Potri.019G065700 [exp]	13.03	0.6254
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.006G126700 [exp]	14.14	0.6624
AT1G51200			A20/AN1-like zinc finger famil...		Potri.016G051700 [exp]	19.18	0.6714
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.003G155800 [exp]	21.07	0.6752
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.017G113300 [exp]	27.14	0.5984	GF14.5
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.004G101700 [exp]	28.14	0.6325
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	28.26	0.6113	MMK3.1
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.005G109900 [exp]	35.09	0.6491
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	35.49	0.6381

Compare expression of checked genes

Potri.006G130300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.